Browse Element(s) Details


OsAffx.3809.1.S1_at

Description tigr:9632.m01544
TID=OsAffx.3809.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Formin Homology 2 Domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1713010/11Formin Homology 2 Domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g17064Os.9692.1.S1_at11/114+9327512..9334651C9orf114 protein, putative, expressed
LOC_Os04g17080NANA4+9336702..9337472retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g17090OsAffx.13843.1.S1_at11/114+9341395..9341763hypothetical protein
LOC_Os04g17100Os.10097.1.S1_at10/114+9343205..9344407farnesylated protein 1, putative, expressed
LOC_Os04g17120OsAffx.13844.1.S1_at11/114+9352386..9355469hypothetical protein
LOC_Os04g17130OsAffx.3809.1.S1_at10/114+9357468..9367968Formin Homology 2 Domain containing protein
LOC_Os04g17140OsAffx.11392.2.S1_x_at8/114+9373101..9375602retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g17140OsAffx.11392.3.S1_at1/114+9373101..9375602retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g17140OsAffx.11392.1.S1_at1/114+9373101..9375602retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g17150OsAffx.3810.1.S1_at11/114+9380713..9381216hypothetical protein
LOC_Os04g17160OsAffx.13845.1.S1_at11/114+9392071..9395862hypothetical protein
LOC_Os04g17160OsAffx.7216.1.S1_at1/114+9392071..9395862hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003779molecular_functionactin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3809.1.S1_at--491--2431Chr04:9361510..9361533 (24 bp)
AAAATGCCACTACCTGATATGATGA
LOC_Os04g17130
OsAffx.3809.1.S1_at--1118--6291Chr04:9359575..9359596 (22 bp)
GATGAGTGCTGCTCTAGCTTTGGAT
LOC_Os04g17130
OsAffx.3809.1.S1_at--456--6731Chr04:9359544..9359568 (25 bp)
GTTCTAGACGCTGATCAACTGGAAA
LOC_Os04g17130
OsAffx.3809.1.S1_at--165--7791Chr04:9359165..9359189 (25 bp)
GGTGCCGAGGGTTGAATCTAAGTTT
LOC_Os04g17130
OsAffx.3809.1.S1_at--465--7451Chr04:9358990..9359010 (21 bp)
GTGTCATCCGCTTGTGAGGAGCTCA
LOC_Os04g17130
OsAffx.3809.1.S1_at--867--2711Chr04:9358423..9358444 (22 bp)
AAGAGGCCAGGCTCTTGGTTTTCGC
LOC_Os04g17130
OsAffx.3809.1.S1_at--1110--7871Chr04:9358407..9358431 (25 bp)
GGTTTTCGCTTGGACAGCCTATTAA
LOC_Os04g17130
OsAffx.3809.1.S1_at--491--9811Chr04:9358385..9358409 (25 bp)
TAAAACTTACAGACACTCGTGCAAA
LOC_Os04g17130
OsAffx.3809.1.S1_at--96--631NONE
ATGCACTTTCTTTGTAAGGGCCTTG
NONE
OsAffx.3809.1.S1_at--805--2871Chr04:9357641..9357664 (24 bp)
AAGGGCCTTGCGGACAAATCACCAC
LOC_Os04g17130
OsAffx.3809.1.S1_at--702--10251Chr04:9357593..9357617 (25 bp)
TTTGTCAACCTAGAAGCTGCTTCTA
LOC_Os04g17130
Target Sequence 
AAAATGCCACTACCTGATATGATGAGTGCTGCTCTAGCTTTGGATGATTCAGTTCTAGACGCTGATCAACTGGAAAATCT
CATAAAATTTTGCCCAACAAAAGAGGAGATGGAACTTCTAAAGAACTACACTGGAGACAAGGAAACTCTTGGAAAGTGTG
AGCAGTTTTTTCTAGAGCTTATGAAGGTGCCGAGGGTTGAATCTAAGTTTAGGATATTTGCTTTCAAGATTCAATTTCAA
TCACAGATTAGGGATGTTAGAAAGAATTTGCTGACTGTGTCATCCGCTTGTGAGGAGCTCAGAGGCTCTGAGAAGTTAAA
GGTGATCATGGAGAAAATTCTGTTTCTAGGAAATAAATTAAATCAGGGAACACCAAGAGGCCAGGCTCTTGGTTTTCGCT
TGGACAGCCTATTAAAACTTACAGACACTCGTGCAAACAACAGTAGAATGACACTAATGCACTTTCTTTGTAAGGGCCTT
GCGGACAAATCACCACATTTACTGGATTTTTATGAGGAATTTGTCAACCTAGAAGCTGCTTCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3809.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis