Browse Element(s) Details


OsAffx.13845.1.S1_at

Description tigr:9632.m01547
TID=OsAffx.13845.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1716011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g17130OsAffx.3809.1.S1_at10/114+9357468..9367968Formin Homology 2 Domain containing protein
LOC_Os04g17140OsAffx.11392.2.S1_x_at8/114+9373101..9375602retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g17140OsAffx.11392.3.S1_at1/114+9373101..9375602retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g17140OsAffx.11392.1.S1_at1/114+9373101..9375602retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g17150OsAffx.3810.1.S1_at11/114+9380713..9381216hypothetical protein
LOC_Os04g17160OsAffx.13845.1.S1_at11/114+9392071..9395862hypothetical protein
LOC_Os04g17160OsAffx.7216.1.S1_at1/114+9392071..9395862hypothetical protein
LOC_Os04g17170NANA4+9397639..9399639retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g17180NANA4+9400040..9401697retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g17190NANA4+9404219..9407449transposon protein, putative, Mutator sub-class
LOC_Os04g17200OsAffx.13846.1.S1_at11/114+9408041..9408659hypothetical protein
LOC_Os04g17200OsAffx.13846.2.S1_s_at11/114+9408041..9408659hypothetical protein
LOC_Os04g17210NANA4+9411208..9413474hypothetical protein
LOC_Os04g17220NANA4+9414765..9415025hypothetical protein
LOC_Os04g17230OsAffx.13847.1.S1_x_at11/114+9419276..9419653hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13845.1.S1_at--403--6071Chr04:9392268..9392292 (25 bp)
GAGTTATTGTACACCGCTCCTTGGT
LOC_Os04g17160
OsAffx.13845.1.S1_at--925--8571Chr04:9392289..9392313 (25 bp)
TGGTTGTCACTTTATTCCCTGCAAA
LOC_Os04g17160
OsAffx.13845.1.S1_at--575--371Chr04:9395359..9395383 (25 bp)
ATCAAGGTTTTGTCATAATCGCTAT
LOC_Os04g17160
OsAffx.13845.1.S1_at--800--9756Chr12:8565978..8566002 (25 bp)
TAATCGCTATGAGGATCATCCCTGA
NONE
OsAffx.13845.1.S1_at--398--2631Chr04:9395411..9395435 (25 bp)
AACCTGGAGCTTGATTTCTTTGGAA
LOC_Os04g17160
OsAffx.13845.1.S1_at--460--7833Chr12:8566050..8566074 (25 bp)
GGCTCCAAGGAGGACTCTTTAGTCA
NONE
OsAffx.13845.1.S1_at--983--5691Chr04:9395470..9395494 (25 bp)
GACTTTATGATATTGCGGGCTTAGA
LOC_Os04g17160
OsAffx.13845.1.S1_at--912--4651Chr04:9395484..9395508 (25 bp)
GCGGGCTTAGATTCAGGTTCGGCAA
LOC_Os04g17160
OsAffx.13845.1.S1_at--1031--5092Chr12:8566110..8566134 (25 bp)
GCAAAAGAAGGTTCCTTCCTTCCTG
NONE
OsAffx.13845.1.S1_at--421--10672Chr04:9395524..9395548 (25 bp)
TTCCTGACACAAATGCCTCTGGACG
LOC_Os04g17160
OsAffx.13845.1.S1_at--237--3311Chr04:9395559..9395815 (25 bp)
CACTACCCGGCAAAGGAGAATTTCT
LOC_Os04g17160
Target Sequence 
GAGTTATTGTACACCGCTCCTTGGTTGTCACTTTATTCCCTGCAAAAGGGATTAGCCTTCTCGGCGAGGTCAACCAGGGG
GATGCCTATCAAGGTTTTGTCATAATCGCTATGAGGATCATCCCTGAATTTAGGAGTGCAACCTGGAGCTTGATTTCTTT
GGAATCCGGAGATGGCTCCAAGGAGGACTCTTTAGTCAGACTTTATGATATTGCGGGCTTAGATTCAGGTTCGGCAAAAG
AAGGTTCCTTCCTTCCTGACACAAATGCCTCTGGACGGGGCTCAACACACTACCCGGCAAAGGAGAATTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13845.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis