Browse Element(s) Details


OsAffx.13846.2.S1_s_at

Description tigr:9629.m06855
TID=OsAffx.13846.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1720011/11hypothetical protein
LOC_Os01g6898011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g17160OsAffx.13845.1.S1_at11/114+9392071..9395862hypothetical protein
LOC_Os04g17160OsAffx.7216.1.S1_at1/114+9392071..9395862hypothetical protein
LOC_Os04g17170NANA4+9397639..9399639retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g17180NANA4+9400040..9401697retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g17190NANA4+9404219..9407449transposon protein, putative, Mutator sub-class
LOC_Os04g17200OsAffx.13846.1.S1_at11/114+9408041..9408659hypothetical protein
LOC_Os04g17200OsAffx.13846.2.S1_s_at11/114+9408041..9408659hypothetical protein
LOC_Os04g17210NANA4+9411208..9413474hypothetical protein
LOC_Os04g17220NANA4+9414765..9415025hypothetical protein
LOC_Os04g17230OsAffx.13847.1.S1_x_at11/114+9419276..9419653hypothetical protein
LOC_Os04g17240NANA4+9426564..9433042retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13846.2.S1_s_at--238--7213Chr01:40401113..40401137 (25 bp)
GTCGTCGCATCCCAGCAGTCGTGCT
LOC_Os01g68980
OsAffx.13846.2.S1_s_at--465--552Chr01:40401141..40401165 (25 bp)
ATCCCGGCGCGAGTTGGGCCCTATG
LOC_Os01g68980
OsAffx.13846.2.S1_s_at--276--4073Chr01:40401150..40401174 (25 bp)
CGAGTTGGGCCCTATGATTATCAGC
LOC_Os01g68980
OsAffx.13846.2.S1_s_at--645--4552Chr01:40401357..40401381 (25 bp)
GCGCCGGCTGCGATTTTTTTGACTG
LOC_Os01g68980
OsAffx.13846.2.S1_s_at--1148--4612Chr01:40401366..40401390 (25 bp)
GCGATTTTTTTGACTGGTATGAGCC
LOC_Os01g68980
OsAffx.13846.2.S1_s_at--475--10352Chr01:40401404..40401428 (25 bp)
TTTTTGAGGGAGCTGTTGAACGATC
LOC_Os01g68980
OsAffx.13846.2.S1_s_at--286--10772Chr01:40401407..40401431 (25 bp)
TTGAGGGAGCTGTTGAACGATCTTC
LOC_Os01g68980
OsAffx.13846.2.S1_s_at--583--3732Chr01:40401449..40401473 (25 bp)
CTAAGAAGGGAGAAGAATGAGCTGC
LOC_Os01g68980
OsAffx.13846.2.S1_s_at--1093--5452Chr01:40401488..40401512 (25 bp)
GAACTGAGGCCAAAGGTAGAAGAGC
LOC_Os01g68980
OsAffx.13846.2.S1_s_at--596--6952Chr01:40401530..40401554 (25 bp)
GTAGCAATGAATGAAGTGGCACAAT
LOC_Os01g68980
OsAffx.13846.2.S1_s_at--513--8652Chr01:40401562..40401586 (25 bp)
TGTGGCAGCTGAGAATGAAGCTAAC
LOC_Os01g68980
Target Sequence 
GTCGTCGCATCCCAGCAGTCGTGCTCCCATCCCGGCGCGAGTTGGGCCCTATGATTATCAGCTGGCGGTGATGTGCCGGT
GTGGTGCGAAGGCGGGCGCCGGCTGCGATTTTTTTGACTGGTATGAGCCCGCAACAAGCAGTTTTTTGAGGGAGCTGTTG
AACGATCTTCGTGAAGCCGTGTTATCGCTAAGAAGGGAGAAGAATGAGCTGCAACGTTGTGTTGAAGAACTGAGGCCAAA
GGTAGAAGAGCGGTGCCTAGAATTAGGGGTAGCAATGAATGAAGTGGCACAATTGAGGCTTGTGGCAGCTGAGAATGAAG
CTAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13846.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis