Browse Element(s) Details


OsAffx.13846.1.S1_at

Description tigr:9632.m01551
TID=OsAffx.13846.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1720011/11hypothetical protein
LOC_Os01g689804/11hypothetical protein
LOC_Os12g096901/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g17160OsAffx.13845.1.S1_at11/114+9392071..9395862hypothetical protein
LOC_Os04g17160OsAffx.7216.1.S1_at1/114+9392071..9395862hypothetical protein
LOC_Os04g17170NANA4+9397639..9399639retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g17180NANA4+9400040..9401697retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g17190NANA4+9404219..9407449transposon protein, putative, Mutator sub-class
LOC_Os04g17200OsAffx.13846.1.S1_at11/114+9408041..9408659hypothetical protein
LOC_Os04g17200OsAffx.13846.2.S1_s_at11/114+9408041..9408659hypothetical protein
LOC_Os04g17210NANA4+9411208..9413474hypothetical protein
LOC_Os04g17220NANA4+9414765..9415025hypothetical protein
LOC_Os04g17230OsAffx.13847.1.S1_x_at11/114+9419276..9419653hypothetical protein
LOC_Os04g17240NANA4+9426564..9433042retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13846.1.S1_at--370--8551Chr04:9408503..9408527 (25 bp)
TGGATTTCCGGGAGCGTGGACAACC
LOC_Os04g17200
OsAffx.13846.1.S1_at--371--191Chr04:9408500..9408524 (25 bp)
ATTTCCGGGAGCGTGGACAACCCTG
LOC_Os04g17200
OsAffx.13846.1.S1_at--859--8511Chr04:9408487..9408511 (25 bp)
TGGACAACCCTGGTCGATGGTACTA
LOC_Os04g17200
OsAffx.13846.1.S1_at--594--2611Chr04:9408482..9408506 (25 bp)
AACCCTGGTCGATGGTACTACCGAT
LOC_Os04g17200
OsAffx.13846.1.S1_at--1035--9371Chr04:9408474..9408498 (25 bp)
TCGATGGTACTACCGATGCCGCAAT
LOC_Os04g17200
OsAffx.13846.1.S1_at--578--8592Chr01:40401247..40401270 (24 bp)
TGGTACTACCGATGCCGCAATCGGG
LOC_Os01g68980
OsAffx.13846.1.S1_at--493--10112Chr01:40401595..40401619 (25 bp)
TATGAGAGCAAGTAACAGTAGGCTA
LOC_Os01g68980
OsAffx.13846.1.S1_at--1118--3433Chr01:40401610..40401634 (25 bp)
CAGTAGGCTAGAGAAACAGAGAGTT
LOC_Os01g68980
OsAffx.13846.1.S1_at--101--1352Chr01:40401627..40401650 (24 bp)
AGAGAGTTTGGCTTGTACTGATGTC
LOC_Os01g68980
OsAffx.13846.1.S1_at--1028--8471Chr04:9408082..9408106 (25 bp)
TGGCTTGTACTGATGTCGTTGGGAT
LOC_Os04g17200
OsAffx.13846.1.S1_at--822--8871Chr04:9408072..9408096 (25 bp)
TGATGTCGTTGGGATGCATGCTTGT
LOC_Os04g17200
Target Sequence 
TGGATTTCCGGGAGCGTGGACAACCCTGGTCGATGGTACTACCGATGCCGCAATCGGGGCGCCGGCTGCGATTTTTTTGA
CTGGTATGAGCCTGCAACAAGTAGTTTTTTGAGGGAGCTGTTGAACGATCTTCATGAAGCCGTGTTATCGCTAAGAAGGG
AGAAGAATGAGCTGCAACATTGTGTTGAAGAACTGAGGCCAAAGGTAGAAGAGCAGTGCCTAGAATTAGGGGTAGCAATG
AATGAAGTGGCACAATTGAGGATTGTGGCAGCTGAGAATGAAGCTAACATGGCTGCTATGAGAGCAAGTAACAGTAGGCT
AGAGAAACAGAGAGTTTGGCTTGTACTGATGTCGTTGGGATGCATGCTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13846.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis