Browse Element(s) Details


OsAffx.13847.1.S1_x_at

Description tigr:9632.m01554
TID=OsAffx.13847.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1723011/11hypothetical protein
LOC_Os03g334902/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g17160OsAffx.13845.1.S1_at11/114+9392071..9395862hypothetical protein
LOC_Os04g17160OsAffx.7216.1.S1_at1/114+9392071..9395862hypothetical protein
LOC_Os04g17170NANA4+9397639..9399639retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g17180NANA4+9400040..9401697retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g17190NANA4+9404219..9407449transposon protein, putative, Mutator sub-class
LOC_Os04g17200OsAffx.13846.1.S1_at11/114+9408041..9408659hypothetical protein
LOC_Os04g17200OsAffx.13846.2.S1_s_at11/114+9408041..9408659hypothetical protein
LOC_Os04g17210NANA4+9411208..9413474hypothetical protein
LOC_Os04g17220NANA4+9414765..9415025hypothetical protein
LOC_Os04g17230OsAffx.13847.1.S1_x_at11/114+9419276..9419653hypothetical protein
LOC_Os04g17240NANA4+9426564..9433042retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g17250Os.46314.2.S1_x_at2/114+9435031..9437775retrotransposon protein, putative, unclassified
LOC_Os04g17250Os.10731.2.A1_at1/114+9435031..9437775retrotransposon protein, putative, unclassified
LOC_Os04g17260NANA4+9438569..9444727transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13847.1.S1_x_at--1088--3951Chr04:9419329..9419353 (25 bp)
CGGAGTTTCAGCGACAGGAGACGAC
LOC_Os04g17230
OsAffx.13847.1.S1_x_at--875--10511Chr04:9419335..9419359 (25 bp)
TTCAGCGACAGGAGACGACAACCGA
LOC_Os04g17230
OsAffx.13847.1.S1_x_at--576--1851Chr04:9419424..9419448 (25 bp)
ACGAACGGTGCGAGTGGAGATCAAA
LOC_Os04g17230
OsAffx.13847.1.S1_x_at--584--4111Chr04:9419425..9419449 (25 bp)
CGAACGGTGCGAGTGGAGATCAAAC
LOC_Os04g17230
OsAffx.13847.1.S1_x_at--746--2571Chr04:9419427..9419451 (25 bp)
AACGGTGCGAGTGGAGATCAAACCA
LOC_Os04g17230
OsAffx.13847.1.S1_x_at--1144--1911Chr04:9419428..9419452 (25 bp)
ACGGTGCGAGTGGAGATCAAACCAT
LOC_Os04g17230
OsAffx.13847.1.S1_x_at--183--6111Chr04:9419435..9419459 (25 bp)
GAGTGGAGATCAAACCATGGCAACA
LOC_Os04g17230
OsAffx.13847.1.S1_x_at--15--10872Chr04:9419499..9419523 (25 bp)
TTGGCGCAAAAGAACTGGCGGCCGT
LOC_Os04g17230
OsAffx.13847.1.S1_x_at--516--4712Chr04:9419516..9419540 (25 bp)
GCGGCCGTGGTAGAGATCAACCTTG
LOC_Os04g17230
OsAffx.13847.1.S1_x_at--743--8172Chr04:9419551..9419575 (25 bp)
GGAAGTGGCGGCACTGATCGGGAAC
LOC_Os04g17230
OsAffx.13847.1.S1_x_at--767--1092Chr04:9419554..9419578 (25 bp)
AGTGGCGGCACTGATCGGGAACGGC
LOC_Os04g17230
Target Sequence 
CGGAGTTTCAGCGACAGGAGACGACAACCGAGGGGTGAACGGGCTTCTCCTCGGTGCTGCGAATCCAATGGAGGCGGCGG
CGACCGAAGGCGACGACGAACGGTGCGAGTGGAGATCAAACCATGGCAACAACCCACGGGTTCACGGTGACGGCAACCTT
CCGGCGGGATTTGGCGCAAAAGAACTGGCGGCCGTGGTAGAGATCAACCTTGCGGAGCAGAGGGAAGTGGCGGCACTGAT
CGGGAACGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13847.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis