Browse Element(s) Details


OsAffx.11392.2.S1_x_at

Description tigr:9633.m02681
TID=OsAffx.11392.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3952011/11hypothetical protein
LOC_Os05g2970011/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g126209/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g171408/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g050606/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g221506/11retrotransposon protein, putative, unclassified
LOC_Os03g425306/11retrotransposon protein, putative, unclassified
LOC_Os06g319905/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g179605/11retrotransposon protein, putative, unclassified
LOC_Os05g164104/11hypothetical protein
LOC_Os06g321404/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g335803/11hypothetical protein
LOC_Os09g111503/11hypothetical protein
LOC_Os07g258603/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g227003/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g200602/11retrotransposon protein, putative, unclassified
LOC_Os03g330122/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g39490OsAffx.11390.3.S1_s_at11/111+22582020..22584606hypothetical protein
LOC_Os01g39500NANA1+22590974..22591198retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g39510OsAffx.11391.1.S1_at11/111+22596895..22597394hypothetical protein
LOC_Os01g39520OsAffx.11392.2.S1_x_at11/111+22598694..22600324hypothetical protein
LOC_Os01g39530NANA1+22600475..22602543retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g39540OsAffx.25476.1.S1_at7/111+22604724..22606158hypothetical protein
LOC_Os01g39540OsAffx.8356.1.S1_x_at1/111+22604724..22606158hypothetical protein
LOC_Os01g39540Os.50889.1.S1_at1/111+22604724..22606158hypothetical protein
LOC_Os01g39550OsAffx.19542.3.S1_x_at6/111+22622580..22626802retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11392.2.S1_x_at--70--97710Chr05:7223136..7223160 (25 bp)
TACCGAAGGTTTAGGGATTATCTCT
LOC_Os05g12620
OsAffx.11392.2.S1_x_at--59--17712Chr05:7223137..7223161 (25 bp)
ACCGAAGGTTTAGGGATTATCTCTG
LOC_Os05g12620
OsAffx.11392.2.S1_x_at--475--53116Chr07:14853948..14853972 (25 bp)
GAAGGTTTAGGGATTATCTCTGGAG
LOC_Os07g25860
OsAffx.11392.2.S1_x_at--1119--68116Chr07:14853952..14853976 (25 bp)
GTTTAGGGATTATCTCTGGAGTGCC
LOC_Os07g25860
OsAffx.11392.2.S1_x_at--613--104317Chr09:6178052..6178145 (25 bp)
TTAGGGATTATCTCTGGAGTGCCCA
LOC_Os09g11150
OsAffx.11392.2.S1_x_at--60--1076Chr04:9570369..9570393 (25 bp)
AGGGATTATCTCTGGAGTGCCCATA
NONE
OsAffx.11392.2.S1_x_at--79--7834Chr05:7223190..7223214 (25 bp)
GGTCATCTTAGATTTTCATGTGTTC
LOC_Os05g12620
OsAffx.11392.2.S1_x_at--277--9615Chr05:7223192..7223216 (25 bp)
TCATCTTAGATTTTCATGTGTTCGA
LOC_Os05g12620
OsAffx.11392.2.S1_x_at--258--9699Chr04:9373695..9373719 (25 bp)
TCACGAGCCCCAATTGAGCTAAAGC
LOC_Os04g17140
OsAffx.11392.2.S1_x_at--447--95911Chr09:6178560..6178584 (25 bp)
TCATTATAAGTGACAAACTCTCTGA
LOC_Os09g11150
OsAffx.11392.2.S1_x_at--547--101711Chr09:6178564..6178588 (25 bp)
TATAAGTGACAAACTCTCTGAGAGG
LOC_Os09g11150
Target Sequence 
TACCGAAGGTTTAGGGATTATCTCTGGAGTGCCCATANGGCACAACANNANNNTTGAGGTCATCTTAGATTTTCATGTGT
TCGANATCTNTNATTTCGACATNCTCATANGCCATCCCATAGAGAAACTNTTGGATGNNCCCGAAACNGGTGNNCTCAAN
CTGAAAATAGGAAGAATNNCNACCNCNGTCCCTATGTTGCAATCAACCAATTNTTNGACGNAGNCTCTTCCTGTTCNNGA
GCCAATTGAGNAAGTGATNGCCATTTCTCCATTNNAGNCCCNAGAGTCNANTNTCGATGAATNNATCGAAGAATTNAATG
AAGGGGAGGATGAANCTGGAGAAACGATNGATNTNCCAAAAACGGATNNGCCNTCACGAGCCCCAATTGAGCTAAAGCNC
NTANCTTCAGGCCTNNGCTATGCNTTTNTGAATGGCGATGCNGAGTCTCNNGTCATTATAAGTGACAAACTCTCTGAGAG
G

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11392.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis