Browse Element(s) Details


Os.50889.1.S1_at

Description gb:AK059264.1
DB_XREF= gi:32969282
TID=Os.50889.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50889 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-025-A11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-025-A11, full insert sequence.
FL= gb:AK059264.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g381502/11hypothetical protein
LOC_Os07g246302/11hypothetical protein
LOC_Os10g058701/11hypothetical protein
LOC_Os08g218901/11hypothetical protein
LOC_Os01g395401/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g38100OsAffx.6063.1.S1_at11/118+24004427..24005539expressed protein
LOC_Os08g38110NANA8+24010387..24011853UDP-glucoronosyl and UDP-glucosyl transferase family protein
LOC_Os08g38120OsAffx.17399.3.S1_at11/118+24023969..24024706expressed protein
LOC_Os08g38130OsAffx.29583.2.S1_x_at11/118+24025733..24027009Cytokinin-O-glucosyltransferase 3, putative
LOC_Os08g38140OsAffx.17394.1.S1_at11/118+24028007..24028713expressed protein
LOC_Os08g38150Os.50889.1.S1_at2/118+24029333..24033190hypothetical protein
LOC_Os08g38150OsAffx.30891.1.S1_x_at1/118+24029333..24033190hypothetical protein
LOC_Os08g38150Os.27101.1.S1_at1/118+24029333..24033190hypothetical protein
LOC_Os08g38160OsAffx.29583.2.S1_x_at2/118+24034944..24036335UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os08g38170Os.37728.1.S1_x_at11/118+24053827..24056624Methyladenine glycosylase family protein, expressed
LOC_Os08g38170Os.8475.2.S1_at11/118+24053827..24056624Methyladenine glycosylase family protein, expressed
LOC_Os08g38180OsAffx.9815.1.S1_at11/118+24057104..24061893transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50889.1.S1_at--467--5812Chr10:10212882..10212906 (25 bp)
GACCCTCAGCCTATTGGCATGATAG
NONE
Os.50889.1.S1_at--595--2512Chr11:16504671..16504695 (25 bp)
ATAGTTGGGCCCATTTGGAGTTGTT
NONE
Os.50889.1.S1_at--238--9211Chr10:10212946..10212970 (25 bp)
TCCAATCCGTGTAAATGTATCCTGA
NONE
Os.50889.1.S1_at--1143--87525Chr10:10212961..10212985 (25 bp)
TGTATCCTGAATGCGCGGAGGTGCA
NONE
Os.50889.1.S1_at--185--6677Chr11:16504762..16504782 (21 bp)
GTTGCTTGACGGATGTGTTTTCTTC
NONE
Os.50889.1.S1_at--900--10556Chr09:1733516..1733675 (25 bp)
TTCTTCTCAAAATACCTGCACACAC
NONE
Os.50889.1.S1_at--166--1431Chr10:10213144..10213168 (25 bp)
AGAACCGTCAACAGACTTCTAGATG
NONE
Os.50889.1.S1_at--171--6651Chr10:10213266..10213286 (21 bp)
GTTGTTCGCTAGTCGCTTAGTTCTC
NONE
Os.50889.1.S1_at--580--4911Chr10:10213297..10213321 (25 bp)
GCTTCTGCGTCGTCGCTTTTATGGT
NONE
Os.50889.1.S1_at--843--6671Chr10:10213337..10213361 (25 bp)
GTTGCTCATCTATGGACCTGTCCAT
NONE
Os.50889.1.S1_at--696--8091Chr10:10213350..10213374 (25 bp)
GGACCTGTCCATGGTGGCAACTTAT
NONE
Target Sequence 
GACCCTCAGCCTATTGGCATGATAGTTGGGCCCATTTGGAGTTGTTTACTTGACTTATGGGGCCTCCAATCCGTGTAAAT
GTATCCTGAATGCGCGGAGGTGCAGTTTGTTGCTTGACGGATGTGTTTTCTTCTCAAAATACCTGCACACACATATTTCA
CCAACACTAGTGGAAATGATTAGTAATAATACCTACCACTAAGTTGGATACCATATTTTATTTCATTATATGTAGGTAAT
GACGGTCAGATATTATGATTTAAGAACCGTCAACAGACTTCTAGATGTTTCGTGCCTAGCCCCAAAGCTCGCCTGTGGAA
TAAGTTAGTTGCCTAGGTTCTTTGCCTAGTGCATAGTCGCTTAGTCGCTTAGTTCTCCGCGTTGTTCGCTAGTCGCTTAG
TTCTCCGCGCTGTTCGCTTCTGCGTCGTCGCTTTTATGGTTTTCTGTAATGTTGTGTTGCTCATCTATGGACCTGTCCAT
GGTGGCAACTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50889.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis