Browse Element(s) Details


OsAffx.17399.3.S1_at

Description tigr:9636.m03836
TID=OsAffx.17399.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3812011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g38092Os.56236.1.S1_at11/118+23997086..24001873expressed protein
LOC_Os08g38092OsAffx.9699.2.A1_at1/118+23997086..24001873expressed protein
LOC_Os08g38100OsAffx.6063.1.S1_at11/118+24004427..24005539expressed protein
LOC_Os08g38110NANA8+24010387..24011853UDP-glucoronosyl and UDP-glucosyl transferase family protein
LOC_Os08g38120OsAffx.17399.3.S1_at11/118+24023969..24024706expressed protein
LOC_Os08g38130OsAffx.29583.2.S1_x_at11/118+24025733..24027009Cytokinin-O-glucosyltransferase 3, putative
LOC_Os08g38140OsAffx.17394.1.S1_at11/118+24028007..24028713expressed protein
LOC_Os08g38150Os.50889.1.S1_at2/118+24029333..24033190hypothetical protein
LOC_Os08g38150OsAffx.30891.1.S1_x_at1/118+24029333..24033190hypothetical protein
LOC_Os08g38150Os.27101.1.S1_at1/118+24029333..24033190hypothetical protein
LOC_Os08g38160OsAffx.29583.2.S1_x_at2/118+24034944..24036335UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17399.3.S1_at--120--531Chr08:24024218..24024416 (25 bp)
ATCGACGGCCAGATGGTAGCCATCG
LOC_Os08g38120
OsAffx.17399.3.S1_at--528--2671Chr08:24024441..24024465 (25 bp)
AAGCCCTGCTGCAGGTGGACATCGT
LOC_Os08g38120
OsAffx.17399.3.S1_at--815--2571Chr08:24024483..24024507 (25 bp)
AACGGCAAGTCCTCCTGGTGCGAAG
LOC_Os08g38120
OsAffx.17399.3.S1_at--802--7291Chr08:24024500..24024524 (25 bp)
GTGCGAAGCCTGATCAGTCAACCGG
LOC_Os08g38120
OsAffx.17399.3.S1_at--413--7071Chr08:24024516..24024540 (25 bp)
GTCAACCGGTGGAGCTTGGTGTTCT
LOC_Os08g38120
OsAffx.17399.3.S1_at--260--6731Chr08:24024536..24024560 (25 bp)
GTTCTCCAGGAACAGAGCATGCGCA
LOC_Os08g38120
OsAffx.17399.3.S1_at--688--6012Chr08:24024562..24024586 (25 bp)
GAGAGATGACGTCCTCCAGATACTG
LOC_Os08g38120
OsAffx.17399.3.S1_at--841--3431Chr08:24024578..24024602 (25 bp)
CAGATACTGCCACGAGGTTCCTCGT
LOC_Os08g38120
OsAffx.17399.3.S1_at--1146--6131Chr08:24024604..24024628 (25 bp)
GAGGGTAGATTCCTTCCATGTCTTT
LOC_Os08g38120
OsAffx.17399.3.S1_at--135--771Chr08:24024621..24024645 (25 bp)
ATGTCTTTTCCCAAGTTCTTGAGAG
LOC_Os08g38120
OsAffx.17399.3.S1_at--622--2751Chr08:24024647..24024671 (25 bp)
AAGACTTGCCATATGGATTCGGGAT
LOC_Os08g38120
Target Sequence 
ATCGACGGCCAGATGGTAGCCATCGTGCTGCGGCTGCTGCTGAAATGGGAAGCCCTGCTGCAGGTGGACATCGTCGTGCT
GCGGCGGCTGCAACGGCAAGTCCTCCTGGTGCGAAGCCTGATCAGTCAACCGGTGGAGCTTGGTGTTCTCCAGGAACAGA
GCATGCGCAAGAGAGATGACGTCCTCCAGATACTGCCACGAGGTTCCTCGTGGAGGGTAGATTCCTTCCATGTCTTTTCC
CAAGTTCTTGAGAGCAAGACTTGCCATATGGATTCGGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17399.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis