Browse Element(s) Details


Os.56236.1.S1_at

Description gb:AK109668.1
DB_XREF= gi:32994877
TID=Os.56236.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56236 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-145-A08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-145-A08, full insert sequence.
FL= gb:AK109668.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3809211/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g38040Os.14919.1.S1_at3/118+23969189..23974141SWIM zinc finger family protein
LOC_Os08g38050OsAffx.25258.2.S1_x_at1/118+23974680..23977787expressed protein
LOC_Os08g38060Os.17417.1.S1_at11/118+23980164..23981409Zinc finger, C3HC4 type family protein, expressed
LOC_Os08g38070Os.56255.1.S1_x_at4/118+23984406..23985838hypothetical protein
LOC_Os08g38070OsAffx.23361.2.S1_x_at2/118+23984406..23985838hypothetical protein
LOC_Os08g38070Os.56255.1.S1_at1/118+23984406..23985838hypothetical protein
LOC_Os08g38080OsAffx.17392.2.S1_at11/118+23989017..23991063Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os08g38086Os.23415.1.A1_s_at11/118+23989997..23996645heat-shock protein, putative, expressed
LOC_Os08g38086Os.10056.1.S1_at11/118+23989997..23996645heat-shock protein, putative, expressed
LOC_Os08g38092Os.56236.1.S1_at11/118+23997086..24001873expressed protein
LOC_Os08g38092OsAffx.9699.2.A1_at1/118+23997086..24001873expressed protein
LOC_Os08g38100OsAffx.6063.1.S1_at11/118+24004427..24005539expressed protein
LOC_Os08g38110NANA8+24010387..24011853UDP-glucoronosyl and UDP-glucosyl transferase family protein
LOC_Os08g38120OsAffx.17399.3.S1_at11/118+24023969..24024706expressed protein
LOC_Os08g38130OsAffx.29583.2.S1_x_at11/118+24025733..24027009Cytokinin-O-glucosyltransferase 3, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56236.1.S1_at--145--5951Chr08:23997785..23997809 (25 bp)
GAGAAGCTGCTAGCCGAAACCGAAA
LOC_Os08g38092
Os.56236.1.S1_at--1146--2371Chr08:23997763..23997787 (25 bp)
AAACGGCTTCCGATGGTTCTGCTCT
LOC_Os08g38092
Os.56236.1.S1_at--1140--1591Chr08:23997676..23997700 (25 bp)
AGCTGCCGCCTCGATTGAGCAATGA
LOC_Os08g38092
Os.56236.1.S1_at--595--5971Chr08:23997614..23997638 (25 bp)
GAGAAGCCAAGATCCATCGTGGAGA
LOC_Os08g38092
Os.56236.1.S1_at--867--6131Chr08:23997546..23997570 (25 bp)
GAGGGATGAACACGATCAGCCAGAT
LOC_Os08g38092
Os.56236.1.S1_at--608--6591Chr08:23997272..23997296 (25 bp)
GATTGCTTCAAAGAGCCTCCTCGAA
LOC_Os08g38092
Os.56236.1.S1_at--531--1531Chr08:23997248..23997272 (25 bp)
AGCATCGAGACTAGCCGAGATCGGT
LOC_Os08g38092
Os.56236.1.S1_at--912--10831Chr08:23997203..23997227 (25 bp)
TTGTGGCTGTAGCTAGTCTTCTCTC
LOC_Os08g38092
Os.56236.1.S1_at--207--7151Chr08:23997188..23997212 (25 bp)
GTCTTCTCTCCCATGTTAGATGTCA
LOC_Os08g38092
Os.56236.1.S1_at--811--2071Chr08:23997163..23997187 (25 bp)
ACATTGGTCTGTGTGGTGTGTGCTC
LOC_Os08g38092
Os.56236.1.S1_at--616--8671Chr08:23997147..23997171 (25 bp)
TGTGTGCTCCGGATGATGATCAAAA
LOC_Os08g38092
Target Sequence 
GAGAAGCTGCTAGCCGAAACCGAAACGGCTTCCGATGGTTCTGCTCTCTCTGACGCTCCATGGACGACCTCACAGAGGCT
AGAGCCACCGAGGAAGAGCACGAGGCATGAGCTGCCGCCTCGATTGAGCAATGATCGTGTCGATAAACGAAGGCGAAGCA
CGGGCCGCAGAGAGAAGCCAAGATCCATCGTGGAGAAGAAAGAAAAATCAAGGAGAAGTGTTGACACATTTGACAGGACG
AGGGATGAACACGATCAGCCAGATAAACCAAGAAAAAGCATCGACAGGCTCGGAGAGATGATCAGATCGATGGGGCTCTG
CAATGTTGATTGCTTCAAAGAGCCTCCTCGAAGCATCGAGACTAGCCGAGATCGGTGATCGATTCAGAGAGTGGCGTTGT
GGCTGTAGCTAGTCTTCTCTCCCATGTTAGATGTCAACATTGGTCTGTGTGGTGTGTGCTCCGGATGATGATCAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56236.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis