Browse Element(s) Details


OsAffx.17392.2.S1_at

Description tigr:9636.m03830
TID=OsAffx.17392.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3808011/11Helix-loop-helix DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g38040Os.14919.1.S1_at3/118+23969189..23974141SWIM zinc finger family protein
LOC_Os08g38050OsAffx.25258.2.S1_x_at1/118+23974680..23977787expressed protein
LOC_Os08g38060Os.17417.1.S1_at11/118+23980164..23981409Zinc finger, C3HC4 type family protein, expressed
LOC_Os08g38070Os.56255.1.S1_x_at4/118+23984406..23985838hypothetical protein
LOC_Os08g38070OsAffx.23361.2.S1_x_at2/118+23984406..23985838hypothetical protein
LOC_Os08g38070Os.56255.1.S1_at1/118+23984406..23985838hypothetical protein
LOC_Os08g38080OsAffx.17392.2.S1_at11/118+23989017..23991063Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os08g38086Os.23415.1.A1_s_at11/118+23989997..23996645heat-shock protein, putative, expressed
LOC_Os08g38086Os.10056.1.S1_at11/118+23989997..23996645heat-shock protein, putative, expressed
LOC_Os08g38092Os.56236.1.S1_at11/118+23997086..24001873expressed protein
LOC_Os08g38092OsAffx.9699.2.A1_at1/118+23997086..24001873expressed protein
LOC_Os08g38100OsAffx.6063.1.S1_at11/118+24004427..24005539expressed protein
LOC_Os08g38110NANA8+24010387..24011853UDP-glucoronosyl and UDP-glucosyl transferase family protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17392.2.S1_at--1011--5311Chr08:23989667..23989691 (25 bp)
GAAGGGTACAGCCATGTCAGAGCTC
LOC_Os08g38080
OsAffx.17392.2.S1_at--162--7991Chr08:23989911..23989935 (25 bp)
GGATGAAGCTCCTGCAAGACCTTGT
LOC_Os08g38080
OsAffx.17392.2.S1_at--860--3351Chr08:23990062..23990086 (25 bp)
CACCGGGAAGGCGTTGATGCTCGAC
LOC_Os08g38080
OsAffx.17392.2.S1_at--850--7211Chr08:23990230..23990254 (25 bp)
GTCGATGAAGCTCTCGGCAGTCAAC
LOC_Os08g38080
OsAffx.17392.2.S1_at--78--8271Chr08:23990245..23990269 (25 bp)
GGCAGTCAACCCAAGAATCGATCTC
LOC_Os08g38080
OsAffx.17392.2.S1_at--995--8991Chr08:23990294..23990439 (25 bp)
TCCAAGGATGTTCTTCGTTTTCCCG
LOC_Os08g38080
OsAffx.17392.2.S1_at--770--8311Chr08:23990494..23990518 (25 bp)
GGCTACAATTATCACGACCGGGCAT
LOC_Os08g38080
OsAffx.17392.2.S1_at--322--791Chr08:23990554..23990578 (25 bp)
ATGTGTTCACCAGCCTCATGCAGAA
LOC_Os08g38080
OsAffx.17392.2.S1_at--273--6011Chr08:23990608..23990963 (25 bp)
GAGAGCCTCAGATGCATCAGACTTT
LOC_Os08g38080
OsAffx.17392.2.S1_at--217--8011Chr08:23990964..23990988 (25 bp)
GGATGGATCATTCCGTAACACCGCA
LOC_Os08g38080
OsAffx.17392.2.S1_at--606--2271Chr08:23990990..23991014 (25 bp)
AAATGCCGTATCCACAGGTCATGAG
LOC_Os08g38080
Target Sequence 
GAAGGGTACAGCCATGTCAGAGCTCGGAAGGGGCAGGCAACCAACAACCACAGCTTAGCAGAGAGGCTGAGAAGGGAGAA
GATCAGCGAGAGGATGAAGCTCCTGCAAGACCTTGTCCCTGGCTGCAGCAAAGTCACCGGGAAGGCGTTGATGCTCGACG
AGATCATCAACTATGTTCAGTCCCTGCAAAGACAAGTCGAGTTTCTGTCGATGAAGCTCTCGGCAGTCAACCCAAGAATC
GATCTCGACATTGAATCACTTGTCAACAATTCCAAGGATGTTCTTCGTTTTCCCGGGCAGCCTTCCTCTGCTCCCATGGG
ATTCTCCTTCTCCACGGAGATGATGCCGGGGCTACAATTATCACGACCGGGCATCCTTCAGGGAGGTGTCCATGGCATGA
TCAATCCAGATGTGTTCACCAGCCTCATGCAGAAGCAGCAGCAAAATGACAAGGGAGCATTCAGAGAGCCTCAGATGCAT
CAGACTTTGGATGGATCATTCCGTAACACCGCACAAATGCCGTATCCACAGGTCATGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17392.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis