Browse Element(s) Details


Os.10056.1.S1_at

Description gb:AK122102.1
DB_XREF= gi:37991748
TID=Os.10056.1
CNT=28
FEA=FLmRNA
TIER=FL+Stack
STK=11
UG=Os.10056 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033125K17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033125K17, full insert sequence.
FL= gb:AK122102.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3808611/11heat-shock protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g38040Os.14919.1.S1_at3/118+23969189..23974141SWIM zinc finger family protein
LOC_Os08g38050OsAffx.25258.2.S1_x_at1/118+23974680..23977787expressed protein
LOC_Os08g38060Os.17417.1.S1_at11/118+23980164..23981409Zinc finger, C3HC4 type family protein, expressed
LOC_Os08g38070Os.56255.1.S1_x_at4/118+23984406..23985838hypothetical protein
LOC_Os08g38070OsAffx.23361.2.S1_x_at2/118+23984406..23985838hypothetical protein
LOC_Os08g38070Os.56255.1.S1_at1/118+23984406..23985838hypothetical protein
LOC_Os08g38080OsAffx.17392.2.S1_at11/118+23989017..23991063Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os08g38086Os.23415.1.A1_s_at11/118+23989997..23996645heat-shock protein, putative, expressed
LOC_Os08g38086Os.10056.1.S1_at11/118+23989997..23996645heat-shock protein, putative, expressed
LOC_Os08g38092Os.56236.1.S1_at11/118+23997086..24001873expressed protein
LOC_Os08g38092OsAffx.9699.2.A1_at1/118+23997086..24001873expressed protein
LOC_Os08g38100OsAffx.6063.1.S1_at11/118+24004427..24005539expressed protein
LOC_Os08g38110NANA8+24010387..24011853UDP-glucoronosyl and UDP-glucosyl transferase family protein

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0009408biological_processresponse to heat
GO:0009704biological_processde-etiolation
GO:0010157biological_processresponse to chlorate
GO:0046685biological_processresponse to arsenic
GO:0005739cellular_componentmitochondrion
GO:0009570cellular_componentchloroplast stroma
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10056.1.S1_at--1011--351Chr08:23992209..23992233 (25 bp)
ATAAGTGAGTTCTCTTGGGCATCCT
LOC_Os08g38086
Os.10056.1.S1_at--288--9531Chr08:23992199..23992223 (25 bp)
TCTCTTGGGCATCCTTTGTTAGAAC
LOC_Os08g38086
Os.10056.1.S1_at--254--7591Chr08:23992193..23992217 (25 bp)
GGGCATCCTTTGTTAGAACTTCAGA
LOC_Os08g38086
Os.10056.1.S1_at--749--5471Chr08:23992178..23992202 (25 bp)
GAACTTCAGAAATAGTTGCTATGGG
LOC_Os08g38086
Os.10056.1.S1_at--759--6671Chr08:23992164..23992188 (25 bp)
GTTGCTATGGGATATAATCATGGTT
LOC_Os08g38086
Os.10056.1.S1_at--453--3571Chr08:23992122..23992146 (25 bp)
CATAGATATTACTTGGGTTGTTACC
LOC_Os08g38086
Os.10056.1.S1_at--832--7671Chr08:23992108..23992132 (25 bp)
GGGTTGTTACCCAGCATTTTTGTAG
LOC_Os08g38086
Os.10056.1.S1_at--878--9951Chr08:23992101..23992125 (25 bp)
TACCCAGCATTTTTGTAGGTGCAGT
LOC_Os08g38086
Os.10056.1.S1_at--1102--6091Chr08:23992075..23992099 (25 bp)
GAGTCTGTAGACTCATTGGCCACCT
LOC_Os08g38086
Os.10056.1.S1_at--1131--11Chr08:23992061..23992085 (25 bp)
ATTGGCCACCTCTATCTATTGGAGG
LOC_Os08g38086
Os.10056.1.S1_at--566--7711Chr08:23992036..23992060 (25 bp)
GGGTGGTCTTATCAATAAAACATGA
LOC_Os08g38086
Target Sequence 
ATAAGTGAGTTCTCTTGGGCATCCTTTGTTAGAACTTCAGAAATAGTTGCTATGGGATATAATCATGGTTTAAAAACATG
ATTTTGTCATAGATATTACTTGGGTTGTTACCCAGCATTTTTGTAGGTGCAGTAGAGTCTGTAGACTCATTGGCCACCTC
TATCTATTGGAGGGGGTGGTCTTATCAATAAAACATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10056.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis