Browse Element(s) Details


Os.17417.1.S1_at

Description gb:AK066326.1
DB_XREF= gi:32976344
TID=Os.17417.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.17417 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013059I17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013059I17, full insert sequence.
FL= gb:AK066326.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3806011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g38030OsAffx.17391.1.S1_at11/118+23958792..23961393hypothetical protein
LOC_Os08g38040Os.14919.1.S1_at3/118+23969189..23974141SWIM zinc finger family protein
LOC_Os08g38050OsAffx.25258.2.S1_x_at1/118+23974680..23977787expressed protein
LOC_Os08g38060Os.17417.1.S1_at11/118+23980164..23981409Zinc finger, C3HC4 type family protein, expressed
LOC_Os08g38070Os.56255.1.S1_x_at4/118+23984406..23985838hypothetical protein
LOC_Os08g38070OsAffx.23361.2.S1_x_at2/118+23984406..23985838hypothetical protein
LOC_Os08g38070Os.56255.1.S1_at1/118+23984406..23985838hypothetical protein
LOC_Os08g38080OsAffx.17392.2.S1_at11/118+23989017..23991063Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os08g38086Os.23415.1.A1_s_at11/118+23989997..23996645heat-shock protein, putative, expressed
LOC_Os08g38086Os.10056.1.S1_at11/118+23989997..23996645heat-shock protein, putative, expressed
LOC_Os08g38092Os.56236.1.S1_at11/118+23997086..24001873expressed protein
LOC_Os08g38092OsAffx.9699.2.A1_at1/118+23997086..24001873expressed protein
LOC_Os08g38100OsAffx.6063.1.S1_at11/118+24004427..24005539expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016567biological_processprotein ubiquitination
GO:0005737cellular_componentcytoplasm
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17417.1.S1_at--77--7551Chr08:23980629..23980653 (25 bp)
GTGGCTCGACGTGCGCAACTCGTGC
LOC_Os08g38060
Os.17417.1.S1_at--63--4771Chr08:23980535..23980559 (25 bp)
GCTGCCTGAATTGCTGCGCGGTAAA
LOC_Os08g38060
Os.17417.1.S1_at--644--7131Chr08:23980461..23980485 (25 bp)
GTCTTGGGTTTCAAACTGGTACTAT
LOC_Os08g38060
Os.17417.1.S1_at--343--6251Chr08:23980384..23980408 (25 bp)
GATGGTTTTGCACCTTTCGATTTGT
LOC_Os08g38060
Os.17417.1.S1_at--644--1331Chr08:23980342..23980366 (25 bp)
AGAGGGATTTGTGTTGTGACTTAAG
LOC_Os08g38060
Os.17417.1.S1_at--948--8671Chr08:23980328..23980352 (25 bp)
TGTGACTTAAGGTTGCGAGGATATT
LOC_Os08g38060
Os.17417.1.S1_at--950--211Chr08:23980261..23980285 (25 bp)
ATTTGTAGAGTAGCTTCTGTATTAC
LOC_Os08g38060
Os.17417.1.S1_at--673--9471Chr08:23980246..23980270 (25 bp)
TCTGTATTACATTTTGCCCTGCAGC
LOC_Os08g38060
Os.17417.1.S1_at--387--10291Chr08:23980234..23980258 (25 bp)
TTTGCCCTGCAGCACAATTTTGTAA
LOC_Os08g38060
Os.17417.1.S1_at--840--3391Chr08:23980187..23980211 (25 bp)
CAGCATGTGGGTGTTCCTGATTCAA
LOC_Os08g38060
Os.17417.1.S1_at--370--8811Chr08:23980176..23980200 (25 bp)
TGTTCCTGATTCAACTCTAATGAGT
LOC_Os08g38060
Target Sequence 
GTGGCTCGACGTGCGCAACTCGTGCCCGCTCTGCCGCTTCGAGCTGCCCACCGACGACCCCCNGTACGAGAGCTGGAAGG
CCTCGCGAGNCTNCGGCTGCCTGAATTGCTGCGCGGTAAAAAAAAAAGGCAAGCCTTTCTTTTCTTGCACAGANTTTATA
GAGTTGTATGTCTTGGGTTTCAAACTGGTACTATGATGAAAGAACCNNACTGGTATGATGAAAGAAAGCGTAGAGGTAGT
CGCANGAGATGGTTTTGCACCTTTCGATTTGTNTACTTTTTTTCTTANAAAGAGGGATTTGTGTTGTGACTTAAGGTTGC
GAGGATATTACATAAGTTTATCCTATATATATACTGTTGTATTTATTCTGAATTTGTAGAGTAGCTTCTGTATTACATTT
TGCCCTGCAGCACAATTTTGTAAATGGATATGGTGGTGAAAATTTCAGCATGTGGGTGTTCCTGATTCAACTCTAATGAG
T

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17417.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis