Browse Element(s) Details


OsAffx.17391.1.S1_at

Description tigr:9636.m03825
TID=OsAffx.17391.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3803011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g37980Os.56292.1.S1_x_at3/118+23933894..23934957retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g37980Os.56292.1.S1_at1/118+23933894..23934957retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g37990OsAffx.29580.1.S1_at11/118+23940848..23941731expressed protein
LOC_Os08g38000NANA8+23943630..23943914hypothetical protein
LOC_Os08g38010Os.25042.2.S1_at11/118+23946780..23950148expressed protein
LOC_Os08g38010Os.25042.1.S1_x_at11/118+23946780..23950148expressed protein
LOC_Os08g38020Os.31548.1.S1_at10/118+23950258..23951892bZIP transcription factor family protein, expressed
LOC_Os08g38030OsAffx.17391.1.S1_at11/118+23958792..23961393hypothetical protein
LOC_Os08g38040Os.14919.1.S1_at3/118+23969189..23974141SWIM zinc finger family protein
LOC_Os08g38050OsAffx.25258.2.S1_x_at1/118+23974680..23977787expressed protein
LOC_Os08g38060Os.17417.1.S1_at11/118+23980164..23981409Zinc finger, C3HC4 type family protein, expressed
LOC_Os08g38070Os.56255.1.S1_x_at4/118+23984406..23985838hypothetical protein
LOC_Os08g38070OsAffx.23361.2.S1_x_at2/118+23984406..23985838hypothetical protein
LOC_Os08g38070Os.56255.1.S1_at1/118+23984406..23985838hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17391.1.S1_at--350--1211Chr08:23961337..23961361 (25 bp)
AGTTTATCTCTTGCATGTAGTTATC
LOC_Os08g38030
OsAffx.17391.1.S1_at--907--451Chr08:23961332..23961356 (25 bp)
ATCTCTTGCATGTAGTTATCTGTCT
LOC_Os08g38030
OsAffx.17391.1.S1_at--320--6951Chr08:23961321..23961345 (25 bp)
GTAGTTATCTGTCTTTTGCATGGTG
LOC_Os08g38030
OsAffx.17391.1.S1_at--101--7151Chr08:23961311..23961335 (25 bp)
GTCTTTTGCATGGTGAATGGTACAG
LOC_Os08g38030
OsAffx.17391.1.S1_at--365--3431Chr08:23961282..23961302 (21 bp)
CAGAGTTTGGTCTGATCAGGTTTCA
LOC_Os08g38030
OsAffx.17391.1.S1_at--957--8831Chr08:23960942..23960962 (21 bp)
TGATCAGGTTTCAGGATGACAACAA
LOC_Os08g38030
OsAffx.17391.1.S1_at--241--991Chr08:23960930..23960954 (25 bp)
AGGATGACAACAAACCCTTGGTTCT
LOC_Os08g38030
OsAffx.17391.1.S1_at--956--2371Chr08:23960919..23960943 (25 bp)
AAACCCTTGGTTCTGTCAGAGAGTA
LOC_Os08g38030
OsAffx.17391.1.S1_at--134--3611Chr08:23959761..23959785 (25 bp)
CATTGAGTCAGCTATCCAGTGCGAT
LOC_Os08g38030
OsAffx.17391.1.S1_at--335--571Chr08:23959748..23959772 (25 bp)
ATCCAGTGCGATAGCAAGGTCAGGC
LOC_Os08g38030
OsAffx.17391.1.S1_at--940--1051Chr08:23959664..23959688 (25 bp)
AGGTGGTCACGCGTGGTGTGCCATG
LOC_Os08g38030
Target Sequence 
AGTTTATCTCTTGCATGTAGTTATCTGTCTTTTGCATGGTGAATGGTACAGGGAGGATGCAGAGTTTGGTCTGATCAGGT
TTCAGGATGACAACAAACCCTTGGTTCTGTCAGAGAGTAAAAATTCAGAGCAAGAAAACCTGAAAAACACAAAGTCATTG
AGTCAGCTATCCAGTGCGATAGCAAGGTCAGGCGGGGCTAGACAGTGGCAGGGGTGCGGGATCTTCTATGCGAAGGAGGA
GGTGGTGCCAGGAGGTGGTCACGCGTGGTGTGCCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17391.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis