Browse Element(s) Details


Os.25042.1.S1_x_at

Description gb:AK103460.1
DB_XREF= gi:32988669
TID=Os.25042.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25042 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-172-E04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033129L23, full insert sequence.
FL= gb:AK103460.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3801011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g37980Os.56292.1.S1_x_at3/118+23933894..23934957retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g37980Os.56292.1.S1_at1/118+23933894..23934957retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g37990OsAffx.29580.1.S1_at11/118+23940848..23941731expressed protein
LOC_Os08g38000NANA8+23943630..23943914hypothetical protein
LOC_Os08g38010Os.25042.2.S1_at11/118+23946780..23950148expressed protein
LOC_Os08g38010Os.25042.1.S1_x_at11/118+23946780..23950148expressed protein
LOC_Os08g38020Os.31548.1.S1_at10/118+23950258..23951892bZIP transcription factor family protein, expressed
LOC_Os08g38030OsAffx.17391.1.S1_at11/118+23958792..23961393hypothetical protein
LOC_Os08g38040Os.14919.1.S1_at3/118+23969189..23974141SWIM zinc finger family protein
LOC_Os08g38050OsAffx.25258.2.S1_x_at1/118+23974680..23977787expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25042.1.S1_x_at--932--2251Chr08:23948197..23948221 (25 bp)
AAATATCAGGCTGTCCTTGCAGCTC
LOC_Os08g38010
Os.25042.1.S1_x_at--350--3631Chr08:23948212..23948236 (25 bp)
CTTGCAGCTCGTTTGAAGGCCAAAT
LOC_Os08g38010
Os.25042.1.S1_x_at--1035--5651Chr08:23948813..23948837 (25 bp)
GACTATCCAGTCTGAGACCATTCTG
LOC_Os08g38010
Os.25042.1.S1_x_at--605--1471Chr08:23948927..23948948 (22 bp)
AGCAGGTGCCCGTTTTCAAGTTTAT
LOC_Os08g38010
Os.25042.1.S1_x_at--837--951Chr08:23948994..23949018 (25 bp)
AGGACATTTATCCATCTTTGACAAA
LOC_Os08g38010
Os.25042.1.S1_x_at--1069--10251Chr08:23949010..23949034 (25 bp)
TTTGACAAATGCCTCCTTTGCCAAG
LOC_Os08g38010
Os.25042.1.S1_x_at--617--451Chr08:23949046..23949070 (25 bp)
ATCTCTAGTTCGTGAAGACTCGTCG
LOC_Os08g38010
Os.25042.1.S1_x_at--667--2391Chr08:23949100..23949124 (25 bp)
AAACTCTTAACACCTGCCAAGTGGC
LOC_Os08g38010
Os.25042.1.S1_x_at--685--4391Chr08:23949115..23949139 (25 bp)
GCCAAGTGGCACCTGTCTATCAATA
LOC_Os08g38010
Os.25042.1.S1_x_at--885--10051Chr08:23949252..23949276 (25 bp)
TAGTTTCTTCTTGTAGGCCTGTTGA
LOC_Os08g38010
Os.25042.1.S1_x_at--978--7651Chr08:23949343..23949366 (24 bp)
GGGATGTCTCCAACATTTTACCTGC
LOC_Os08g38010
Target Sequence 
AAATATCAGGCTGTCCTTGCAGCTCGTTTGAAGGCCAAATACTTTTCTGGCAAGGCTTTTGGTAAAGAAAATGTGTTTGA
AGAAATGACTATCCAGTCTGAGACCATTCTGTTAAGCAGGTGCCCGTTTTCAAGTTTATTTGCAGATCCAGCAAAATTTT
GCCGGGAGAAGAGCTGTACTAAAGAGGACATTTATCCATCTTTGACAAATGCCTCCTTTGCCAAGCATAACCATTTATCT
CTAGTTCGTGAAGACTCGTCGAAGTAATTAGCGGACAGTTTGTCTGCAGAAAACTCTTAACACCTGCCAAGTGGCACCTG
TCTATCAATACCACCTAATGGATGAGGGTTGGGTAGTTACTTTATTAACTACATATGTTATCCTTAAACTAAATGAACTG
AAACATGTAAAATATCAACAGGCCTAATTTAACTTGAGAGTTTAGTTTCTTCTTGTAGGCCTGTTGAGCATATAGATAGC
TATGAACTTAACTCTATGCAAAACAATGCTCATATTGAGATTATTCCTCTAGGGGGATGTCTCCAACATTTTACCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25042.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis