Browse Element(s) Details


Os.37728.1.S1_x_at

Description gb:AK104597.1
DB_XREF= gi:32989806
TID=Os.37728.1
CNT=23
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.37728 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-308-E03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-308-E03, full insert sequence.
FL= gb:AK059000.1 gb:AK104597.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3817011/11Methyladenine glycosylase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g38150Os.50889.1.S1_at2/118+24029333..24033190hypothetical protein
LOC_Os08g38150OsAffx.30891.1.S1_x_at1/118+24029333..24033190hypothetical protein
LOC_Os08g38150Os.27101.1.S1_at1/118+24029333..24033190hypothetical protein
LOC_Os08g38160OsAffx.29583.2.S1_x_at2/118+24034944..24036335UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os08g38170Os.37728.1.S1_x_at11/118+24053827..24056624Methyladenine glycosylase family protein, expressed
LOC_Os08g38170Os.8475.2.S1_at11/118+24053827..24056624Methyladenine glycosylase family protein, expressed
LOC_Os08g38180OsAffx.9815.1.S1_at11/118+24057104..24061893transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g38190Os.43203.1.S1_x_at9/118+24064852..24068994expressed protein
LOC_Os08g38200Os.53466.1.S1_at10/118+24071599..24077657phosphatidylinositol 3- and 4-kinase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006281biological_processDNA repair
GO:0003824molecular_functioncatalytic activity
GO:0008725molecular_functionDNA-3-methyladenine glycosylase I activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37728.1.S1_x_at--475--10491Chr08:24055938..24055962 (25 bp)
TTCATGCAGGCCTCCGGCATCGTCA
LOC_Os08g38170
Os.37728.1.S1_x_at--89--8291Chr08:24056025..24056049 (25 bp)
GGCATTACCAACGTCGCTGCCTAAT
LOC_Os08g38170
Os.37728.1.S1_x_at--1002--2571Chr08:24056034..24056058 (25 bp)
AACGTCGCTGCCTAATGACAAAAAA
LOC_Os08g38170
Os.37728.1.S1_x_at--916--9331Chr08:24056089..24056113 (25 bp)
TCGCGAGCTCGACAGTGTTGCAAAT
LOC_Os08g38170
Os.37728.1.S1_x_at--809--4091Chr08:24056098..24056122 (25 bp)
CGACAGTGTTGCAAATAGCTTAGCT
LOC_Os08g38170
Os.37728.1.S1_x_at--666--10851Chr08:24056311..24056335 (25 bp)
TTGGCGATGCTTGGATGTATTGTGT
LOC_Os08g38170
Os.37728.1.S1_x_at--55--6671Chr08:24056367..24056391 (25 bp)
GTTGCTCACTCCCACTTGGAAAGTG
LOC_Os08g38170
Os.37728.1.S1_x_at--276--6771Chr08:24056429..24056453 (25 bp)
GTTAAGATTTCCTTCTGTTTGGGCT
LOC_Os08g38170
Os.37728.1.S1_x_at--1054--10671Chr08:24056437..24056461 (25 bp)
TTCCTTCTGTTTGGGCTTAACTGGG
LOC_Os08g38170
Os.37728.1.S1_x_at--825--7411Chr08:24056462..24056486 (25 bp)
GTGTTGCATGAGAATGGAGCCCACA
LOC_Os08g38170
Os.37728.1.S1_x_at--529--8091Chr08:24056477..24056501 (25 bp)
GGAGCCCACAATGAACTCACATGTT
LOC_Os08g38170
Target Sequence 
TTCATGCAGGCCTCCGGCATCGTCATCGACCACCTCGTCGACTGCTTCCGCTTCCCTGAATGCCTCCACCTCGCCGACCG
CTCCTGGGGCATTACCAACGTCGCTGCCTAATGACAAAAAAAAAAAAAAANCTTGAACTTTTNTGNCGCTCGCGAGCTCG
ACAGTGTTGCAAATAGCTTAGCTGNGTNCATTGCATGTTGCNNCGGCCAGCAAAGCTGNTACACTATACTANAATATTGG
GNCGAGGCGGGTGNCCCGTANATGCAGTAGTGCAGNTNAACAAGCCGAANACTTTGGTGTGGCAAATNAAACCTCAAATT
CAAATTCCCCCCCTTGAAAATTTCTTTTTGTTTGGTTTTTCACTCTGGGGATTGGCGATGCTTGGATGTATTGTGTAGTA
GGGTAGGGCTAAGTTTTTTTTTTTTTTTGGTTGCTCACTCCCACTTGGAAAGTGGTGTAGTGAGTTGTTAGTGGATGGTT
TGTAAGAATAAGTTAAGATTTCCTTCTGTTTGGGCTTAACTGGGGTGTTGCATGAGAATGGAGCCCACAATGAACTCACA
TGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37728.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis