Browse Element(s) Details


Os.53466.1.S1_at

Description gb:AK072785.1
DB_XREF= gi:32982808
TID=Os.53466.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53466 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023143J12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023143J12, full insert sequence.
FL= gb:AK072785.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3820010/11phosphatidylinositol 3- and 4-kinase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g38170Os.37728.1.S1_x_at11/118+24053827..24056624Methyladenine glycosylase family protein, expressed
LOC_Os08g38170Os.8475.2.S1_at11/118+24053827..24056624Methyladenine glycosylase family protein, expressed
LOC_Os08g38180OsAffx.9815.1.S1_at11/118+24057104..24061893transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g38190Os.43203.1.S1_x_at9/118+24064852..24068994expressed protein
LOC_Os08g38200Os.53466.1.S1_at10/118+24071599..24077657phosphatidylinositol 3- and 4-kinase family protein, putative, expressed
LOC_Os08g38210Os.5093.1.S1_at11/118+24089567..24095822Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os08g38220Os.10747.1.S1_s_at11/118+24099848..24101100Dof domain, zinc finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004428molecular_functioninositol or phosphatidylinositol kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53466.1.S1_at--459--5131Chr08:24072148..24072172 (25 bp)
GCAAATCTCATAGTGGCGTCGCGAA
LOC_Os08g38200
Os.53466.1.S1_at--884--9691Chr08:24072054..24072078 (25 bp)
TCACAACTCCAGCTTCGCAAAGTTA
LOC_Os08g38200
Os.53466.1.S1_at--437--2971Chr08:24072010..24072034 (25 bp)
AATGGAGCCCATTCCTTGAGAAGTT
LOC_Os08g38200
Os.53466.1.S1_at--29--5351Chr08:24071991..24072015 (25 bp)
GAAGTTCCAGGATTTGCTCCAGAGC
LOC_Os08g38200
Os.53466.1.S1_at--1095--851NONE
ATGGCTGTCGCAGAGGCTAGGCACT
NONE
Os.53466.1.S1_at--387--8311Chr08:24071914..24071938 (25 bp)
GGCTAGGCACTTCTTGCCAATTTTA
LOC_Os08g38200
Os.53466.1.S1_at--574--2651Chr08:24071856..24071880 (25 bp)
AACCAAGCGGTATTCCTGAGCAGTT
LOC_Os08g38200
Os.53466.1.S1_at--69--5931Chr08:24071839..24071863 (25 bp)
GAGCAGTTGTGTTCTACCGTGGTAA
LOC_Os08g38200
Os.53466.1.S1_at--567--7331Chr08:24071803..24071827 (25 bp)
GTGCAGTAGCCCTTCACTAGATAGT
LOC_Os08g38200
Os.53466.1.S1_at--530--2371Chr08:24071766..24071790 (25 bp)
AAACCTTCTCTGATATATGTGCACA
LOC_Os08g38200
Os.53466.1.S1_at--1084--3471Chr08:24071684..24071708 (25 bp)
CAGGACATTGTTGCGTCTTTACGTA
LOC_Os08g38200
Target Sequence 
GCAAATCTCATAGTGGCGTCGCGAAGAACAAGGTTACTTCTAAAATTAACAGCAATAGTTATAGTGGCAATCATAGTGCC
AAGGAGAAGCTCCCTCACAACTCCAGCTTCGCAAAGTTATCAGACTTGAGTGCCAACAAATGGAGCCCATTCCTTGAGAA
GTTCCAGGATTTGCTCCAGAGCATGTTCCAAGATCGAAAGCAAACTGCAGGCCGCAACCCATGGCTGTCGCAGAGGCTAG
GCACTTCTTGCCAATTTTAAAATGGTAGAGAAGAAATAAAGTAATGTAGGCCAACCAAGCGGTATTCCTGAGCAGTTGTG
TTCTACCGTGGTAATAGTTGCATACGTGCAGTAGCCCTTCACTAGATAGTACAAGTAGAATAAAACCTTCTCTGATATAT
GTGCACAGTGGTCATAAGGTAGAGATATCCCTACAGAGATCTAAAATGTGAGTATGTATTCCAGCAGGACATTGTTGCGT
CTTTACGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53466.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis