Browse Element(s) Details


Os.10747.1.S1_s_at

Description gb:AU075672
DB_XREF= gi:5455506
DB_XREF=AU075672
CLONE=E10134_6Z
TID=Os.10747.1
CNT=6
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.10747 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_188764.1 (A.thaliana) Dof zinc finger protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3822011/11Dof domain, zinc finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g38200Os.53466.1.S1_at10/118+24071599..24077657phosphatidylinositol 3- and 4-kinase family protein, putative, expressed
LOC_Os08g38210Os.5093.1.S1_at11/118+24089567..24095822Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os08g38220Os.10747.1.S1_s_at11/118+24099848..24101100Dof domain, zinc finger family protein, expressed
LOC_Os08g38230NANA8+24103317..24103630hypothetical protein
LOC_Os08g38240Os.24174.1.A1_at11/118+24105445..24109269transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g38250OsAffx.6065.1.S1_x_at11/118+24112203..24112802expressed protein
LOC_Os08g38260OsAffx.17395.1.S1_at11/118+24117056..24118347hypothetical protein
LOC_Os08g38270Os.55554.1.S1_at11/118+24119910..24121014Fasciclin-like arabinogalactan protein 1 precursor, putative, expressed
LOC_Os08g38270OsAffx.6066.1.S1_s_at11/118+24119910..24121014Fasciclin-like arabinogalactan protein 1 precursor, putative, expressed
LOC_Os08g38280Os.52746.1.S1_at11/118+24122115..24123689expressed protein
LOC_Os08g38289NANA8+24125232..24126109hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009733biological_processresponse to auxin stimulus
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0045449biological_processregulation of transcription
GO:0045941biological_processpositive regulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10747.1.S1_s_at--310--2771Chr08:24100519..24100543 (25 bp)
AAGACGACGACTTCCACAACGACGA
LOC_Os08g38220
Os.10747.1.S1_s_at--1123--4551Chr08:24100555..24100579 (25 bp)
GCGCCTGACACCACGAGCGAGATCA
LOC_Os08g38220
Os.10747.1.S1_s_at--282--5891Chr08:24100569..24100593 (25 bp)
GAGCGAGATCACCACGGAGCTCGTC
LOC_Os08g38220
Os.10747.1.S1_s_at--709--11Chr08:24100687..24100711 (25 bp)
ATCACCAAGAGTCTGGCCGACCCGG
LOC_Os08g38220
Os.10747.1.S1_s_at--791--8371Chr08:24100737..24100761 (25 bp)
GGCGTTCGACATGGCGTCCTACTGG
LOC_Os08g38220
Os.10747.1.S1_s_at--578--6291Chr08:24100887..24100911 (25 bp)
GATGATTTCATCAGTTTCCGATTAA
LOC_Os08g38220
Os.10747.1.S1_s_at--381--671Chr08:24100947..24100971 (25 bp)
ATGACGTTAATCTTAGCTTTTTGAG
LOC_Os08g38220
Os.10747.1.S1_s_at--239--10451Chr08:24100959..24100983 (25 bp)
TTAGCTTTTTGAGATTAGTGGCCGT
LOC_Os08g38220
Os.10747.1.S1_s_at--664--10071Chr08:24100974..24100998 (25 bp)
TAGTGGCCGTGTTTTACTCTCGAGA
LOC_Os08g38220
Os.10747.1.S1_s_at--401--6811Chr08:24101025..24101049 (25 bp)
GTTTTTCATGTGTATAACTCCTATC
LOC_Os08g38220
Os.10747.1.S1_s_at--654--2551Chr08:24101040..24101064 (25 bp)
AACTCCTATCAAGGCTTGGGCTTTT
LOC_Os08g38220
Target Sequence 
AAGACGACGACTTCCACAACGACGACGACACCGCCGGCGCCTGACACCACGAGCGAGATCACCACGGAGCTCGTCGTCCC
GGCCGTGGAGGAGGACTCGTTCACGGACCTNCTGCAGCCGGACTCCGCCGCCGTCACCCTCGGCCTCGACTTCTNCCGAC
TACCCGTCCATCACCAAGAGTCTGGCCGACCCGGACCTGCACTTNCGANTGGCCNCCGCCGGCGTTCGACATGGCGTCCT
ACTGGCCGGCCGGCGCCGGGTTCGCCGACCCGGACCCGACCGCCGTGTTCCTCAACCTCCCATGAGCCCACTCGCCCGGC
GGCGGCGGCGGCGGCTCAGGTGGGTGTGGGGGTTTCCAACTACACCCGATGATGATTTCATCAGTTTCCGATTAATTAGT
AAATTGCGCGTGGGGTATATGGTGAAAATGATGACGTTAATCTTAGCTTTTTGAGATTAGTGGCCGTGTTTTACTCTCGA
GAGGGGCTAACTCAACCAAGTTTGGGTTGTTTTTCATGTGTATAACTCCTATCAAGGCTTGGGCTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10747.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis