Browse Element(s) Details


OsAffx.6066.1.S1_s_at

Description tigr:9636.m03854
TID=OsAffx.6066.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=pollen surface protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3827011/11Fasciclin-like arabinogalactan protein 1 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g38210Os.5093.1.S1_at11/118+24089567..24095822Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os08g38220Os.10747.1.S1_s_at11/118+24099848..24101100Dof domain, zinc finger family protein, expressed
LOC_Os08g38230NANA8+24103317..24103630hypothetical protein
LOC_Os08g38240Os.24174.1.A1_at11/118+24105445..24109269transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g38250OsAffx.6065.1.S1_x_at11/118+24112203..24112802expressed protein
LOC_Os08g38260OsAffx.17395.1.S1_at11/118+24117056..24118347hypothetical protein
LOC_Os08g38270Os.55554.1.S1_at11/118+24119910..24121014Fasciclin-like arabinogalactan protein 1 precursor, putative, expressed
LOC_Os08g38270OsAffx.6066.1.S1_s_at11/118+24119910..24121014Fasciclin-like arabinogalactan protein 1 precursor, putative, expressed
LOC_Os08g38280Os.52746.1.S1_at11/118+24122115..24123689expressed protein
LOC_Os08g38289NANA8+24125232..24126109hypothetical protein
LOC_Os08g38300OsAffx.29587.1.S1_s_at11/118+24128481..24129312Histone H2B, putative, expressed
LOC_Os08g38300OsAffx.10929.1.S1_x_at2/118+24128481..24129312Histone H2B, putative, expressed
LOC_Os08g38310Os.53633.1.S1_x_at11/118+24130321..24137033expressed protein
LOC_Os08g38310OsAffx.17396.1.S1_at10/118+24130321..24137033expressed protein
LOC_Os08g38310OsAffx.17396.1.S1_x_at9/118+24130321..24137033expressed protein
LOC_Os08g38320Os.8660.1.S1_at11/118+24141188..24144560Protein kinase G11A, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6066.1.S1_s_at--740--4331Chr08:24120202..24120226 (25 bp)
CCATGAGGGCGTTCATGCCCACGTA
LOC_Os08g38270
OsAffx.6066.1.S1_s_at--913--691Chr08:24120204..24120228 (25 bp)
ATGAGGGCGTTCATGCCCACGTACA
LOC_Os08g38270
OsAffx.6066.1.S1_s_at--208--6131Chr08:24120206..24120230 (25 bp)
GAGGGCGTTCATGCCCACGTACAAG
LOC_Os08g38270
OsAffx.6066.1.S1_s_at--334--7251Chr08:24120276..24120300 (25 bp)
GTCCCGGTCTACTACTCGCTGCGGA
LOC_Os08g38270
OsAffx.6066.1.S1_s_at--558--7151Chr08:24120282..24120306 (25 bp)
GTCTACTACTCGCTGCGGAGCCTCA
LOC_Os08g38270
OsAffx.6066.1.S1_s_at--847--9331Chr08:24120424..24120448 (25 bp)
TCGCGCGGATCAAGGACACGGTGTA
LOC_Os08g38270
OsAffx.6066.1.S1_s_at--291--7951Chr08:24120430..24120454 (25 bp)
GGATCAAGGACACGGTGTACGACAA
LOC_Os08g38270
OsAffx.6066.1.S1_s_at--1055--7431Chr08:24120444..24120468 (25 bp)
GTGTACGACAAGGACCCCATCGCCA
LOC_Os08g38270
OsAffx.6066.1.S1_s_at--881--4431Chr08:24120465..24120489 (25 bp)
GCCATCTACGCGGTGGACACGGTGC
LOC_Os08g38270
OsAffx.6066.1.S1_s_at--575--451Chr08:24120468..24120492 (25 bp)
ATCTACGCGGTGGACACGGTGCTCG
LOC_Os08g38270
OsAffx.6066.1.S1_s_at--636--1451Chr08:24120577..24120601 (25 bp)
AGAAGGCGTCCCACCGGCACGTGGC
LOC_Os08g38270
Target Sequence 
CCATGAGGGCGTTCATGCCCACGTACAAGAACCTCACCGCCGACGGCAAGGCGTCGCTGCTGCTCTTCCACGCCGTCCCG
GTCTACTACTCGCTGCGGAGCCTCAAGTCCAACAACGGCGTCATGAACACCCTCGCCACCGACGGCTCCGCCAAGAACTT
CAACTTCACGGTGCAGAACGAGGGCGACAAGGTGACCATCAAGACGGACGCCTCCGACGGCGTCGCGCGGATCAAGGACA
CGGTGTACGACAAGGACCCCATCGCCATCTACGCGGTGGACACGGTGCTCGAGCCGGTGGAGCTCTTCGAGCCCGCCGAG
TCCCCGGCGCCGGCGCCCGCCCCGGTCGCCGACGCGCCCAAGGCCTCCAAGTCCAAGAAGGCGTCCCACCGGCACGTGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6066.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis