Browse Element(s) Details


Os.8660.1.S1_at

Description gb:AK103656.1
DB_XREF= gi:32988865
TID=Os.8660.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8660 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033135F07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033135F07, full insert sequence.
FL= gb:AK103656.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3832011/11Protein kinase G11A, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g38260OsAffx.17395.1.S1_at11/118+24117056..24118347hypothetical protein
LOC_Os08g38270Os.55554.1.S1_at11/118+24119910..24121014Fasciclin-like arabinogalactan protein 1 precursor, putative, expressed
LOC_Os08g38270OsAffx.6066.1.S1_s_at11/118+24119910..24121014Fasciclin-like arabinogalactan protein 1 precursor, putative, expressed
LOC_Os08g38280Os.52746.1.S1_at11/118+24122115..24123689expressed protein
LOC_Os08g38289NANA8+24125232..24126109hypothetical protein
LOC_Os08g38300OsAffx.29587.1.S1_s_at11/118+24128481..24129312Histone H2B, putative, expressed
LOC_Os08g38300OsAffx.10929.1.S1_x_at2/118+24128481..24129312Histone H2B, putative, expressed
LOC_Os08g38310Os.53633.1.S1_x_at11/118+24130321..24137033expressed protein
LOC_Os08g38310OsAffx.17396.1.S1_at10/118+24130321..24137033expressed protein
LOC_Os08g38310OsAffx.17396.1.S1_x_at9/118+24130321..24137033expressed protein
LOC_Os08g38320Os.8660.1.S1_at11/118+24141188..24144560Protein kinase G11A, putative, expressed
LOC_Os08g38330OsAffx.32149.5.S1_at11/118+24146225..24147826F-box domain containing protein
LOC_Os08g38340Os.56244.1.S1_at11/118+24150017..24151534expressed protein
LOC_Os08g38350OsAffx.32149.1.S1_x_at11/118+24152694..24154403hypothetical protein
LOC_Os08g38350OsAffx.32149.1.S1_at11/118+24152694..24154403hypothetical protein
LOC_Os08g38350Os.29072.1.S1_at2/118+24152694..24154403hypothetical protein
LOC_Os08g38360OsAffx.32149.2.S1_at11/118+24155309..24156110F-box domain containing protein
LOC_Os08g38370OsAffx.17399.1.S1_at11/118+24158893..24161871Zinc finger C-x8-C-x5-C-x3-H type family protein
LOC_Os08g38380OsAffx.17399.2.S1_at11/118+24165537..24167260RNA recognition motif family protein

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
GO:0005737cellular_componentcytoplasm
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8660.1.S1_at--730--9851Chr08:24143962..24143986 (25 bp)
TACACTCTTCAATGTTGTTGGCCAG
LOC_Os08g38320
Os.8660.1.S1_at--770--8191Chr08:24144001..24144025 (25 bp)
GGAATCCCCAATGGTGAGCTTCTCA
LOC_Os08g38320
Os.8660.1.S1_at--676--3171Chr08:24144131..24144155 (25 bp)
AATTGGGCGCTCATACGATGTGCAA
LOC_Os08g38320
Os.8660.1.S1_at--317--6471Chr08:24144166..24144190 (25 bp)
GATACCCAAGCCAGTTGAGCTCGAG
LOC_Os08g38320
Os.8660.1.S1_at--556--4331Chr08:24144209..24144233 (25 bp)
CCAGCTACTGAGAAGGTTGCCCCGG
LOC_Os08g38320
Os.8660.1.S1_at--949--6051Chr08:24144266..24144290 (25 bp)
GAGTTCGAGTTCTTCTAGGTTTGCT
LOC_Os08g38320
Os.8660.1.S1_at--915--6171Chr08:24144374..24144398 (25 bp)
GATGTATTCCGAGCAACCTTTATTT
LOC_Os08g38320
Os.8660.1.S1_at--890--7311Chr08:24144408..24144432 (25 bp)
GTGCTTATGATCTAATCCGTCCTTC
LOC_Os08g38320
Os.8660.1.S1_at--602--551Chr08:24144422..24144446 (25 bp)
ATCCGTCCTTCGCATGTTGTAATTT
LOC_Os08g38320
Os.8660.1.S1_at--879--2911Chr08:24144474..24144498 (25 bp)
AAGGATGTGGTACCCTGTTTCACCT
LOC_Os08g38320
Os.8660.1.S1_at--1077--4991Chr08:24144534..24144558 (25 bp)
GCATGTTTGCAACTGAAGCTTCTTT
LOC_Os08g38320
Target Sequence 
TACACTCTTCAATGTTGTTGGCCAGCCCCTGCGGTTCCCGGAATCCCCAATGGTGAGCTTCTCAGCCAGGGACCTGATAA
GAGGATTGCTGGTCAAGGACCCGCAGCACCGTCTTGCCTACAAGCGTGGGGCGACGGAGATAAAGCAGCATCCATTCTTT
GAGGGCGTGAATTGGGCGCTCATACGATGTGCAAGCCCTCCTGAGATACCCAAGCCAGTTGAGCTCGAGCGCCCACCAAA
GCCAGCACCAGCTACTGAGAAGGTTGCCCCGGCTGCCAACCAGAAGGGCTCAGACAATTATCTAGAGTTCGAGTTCTTCT
AGGTTTGCTTTCCTTTGTGTTTCTGAACAGGGTTGGTGCATGCAAGCTGATGTATGAAAGGATGGCTTAGAAATATTTTG
TTTAGGTTATTAGATGTATTCCGAGCAACCTTTATTTTTCATTGAAGTGCTTATGATCTAATCCGTCCTTCGCATGTTGT
AATTTTTAATTAAATCTAGTGATGATGCTTGAAAGGATGTGGTACCCTGTTTCACCTGGCACTATTAATTCCAGTTTTGC
TTCAGAATAATTGCATGTTTGCAACTGAAGCTTCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8660.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis