Browse Element(s) Details


OsAffx.32149.2.S1_at

Description tigr:9636.m03863
TID=OsAffx.32149.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3836011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g38310Os.53633.1.S1_x_at11/118+24130321..24137033expressed protein
LOC_Os08g38310OsAffx.17396.1.S1_at10/118+24130321..24137033expressed protein
LOC_Os08g38310OsAffx.17396.1.S1_x_at9/118+24130321..24137033expressed protein
LOC_Os08g38320Os.8660.1.S1_at11/118+24141188..24144560Protein kinase G11A, putative, expressed
LOC_Os08g38330OsAffx.32149.5.S1_at11/118+24146225..24147826F-box domain containing protein
LOC_Os08g38340Os.56244.1.S1_at11/118+24150017..24151534expressed protein
LOC_Os08g38350OsAffx.32149.1.S1_x_at11/118+24152694..24154403hypothetical protein
LOC_Os08g38350OsAffx.32149.1.S1_at11/118+24152694..24154403hypothetical protein
LOC_Os08g38350Os.29072.1.S1_at2/118+24152694..24154403hypothetical protein
LOC_Os08g38360OsAffx.32149.2.S1_at11/118+24155309..24156110F-box domain containing protein
LOC_Os08g38370OsAffx.17399.1.S1_at11/118+24158893..24161871Zinc finger C-x8-C-x5-C-x3-H type family protein
LOC_Os08g38380OsAffx.17399.2.S1_at11/118+24165537..24167260RNA recognition motif family protein
LOC_Os08g38400Os.8615.1.S1_at11/118+24178302..24181973Oligopeptide transporter 5, putative, expressed
LOC_Os08g38400Os.50452.2.S1_x_at1/118+24178302..24181973Oligopeptide transporter 5, putative, expressed
LOC_Os08g38410Os.26860.1.S1_at11/118+24180502..24185908RNA recognition motif family protein, expressed
LOC_Os08g38410Os.53794.1.S1_at11/118+24180502..24185908RNA recognition motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32149.2.S1_at--1093--1991Chr08:24155776..24155800 (25 bp)
ACTCCCTCCAAGAACGTGGCAGGCA
LOC_Os08g38360
OsAffx.32149.2.S1_at--717--1831Chr08:24155751..24155775 (25 bp)
ACGAGAACGTTACGACGACCCAGAG
LOC_Os08g38360
OsAffx.32149.2.S1_at--118--991Chr08:24155565..24155589 (25 bp)
AGGATGACGAGCATTTTTCCGGCCT
LOC_Os08g38360
OsAffx.32149.2.S1_at--429--8111Chr08:24155480..24155504 (25 bp)
GGACGACTACCACGCATCGGGATTC
LOC_Os08g38360
OsAffx.32149.2.S1_at--384--1711Chr08:24155472..24155496 (25 bp)
ACCACGCATCGGGATTCGGCTACGG
LOC_Os08g38360
OsAffx.32149.2.S1_at--345--9931Chr08:24155452..24155476 (25 bp)
TACGGCCCGATGACCAGAACATACA
LOC_Os08g38360
OsAffx.32149.2.S1_at--977--2851Chr08:24155407..24155431 (25 bp)
AAGTGCGTGGCCAACTTCACAACAT
LOC_Os08g38360
OsAffx.32149.2.S1_at--437--2051Chr08:24155394..24155418 (25 bp)
ACTTCACAACATACTCCAATGGCCG
LOC_Os08g38360
OsAffx.32149.2.S1_at--864--4351Chr08:24155370..24155394 (25 bp)
GCCGCAGGAGAAACGTTCCCGGTGA
LOC_Os08g38360
OsAffx.32149.2.S1_at--529--7771Chr08:24155350..24155374 (25 bp)
GGTGAACCTCTCTATCTGTGGCGTG
LOC_Os08g38360
OsAffx.32149.2.S1_at--295--3771Chr08:24155343..24155367 (25 bp)
CTCTCTATCTGTGGCGTGCTGACGA
LOC_Os08g38360
Target Sequence 
ACTCCCTCCAAGAACGTGGCAGGCAACGAGAACGTTACGACGACCCAGAGCCGGACCGCTTCTCGTCGACGTCGAGAGGG
GAGGATGACGAGCATTTTTCCGGCCTCCTGAACCCCGCCGTCGCCGATGGCGAGAGAGAGGTCTCCGTCGTCGTCCCTCC
CTCGCCGGACGACTACCACGCATCGGGATTCGGCTACGGCCCGATGACCAGAACATACAAGCTACTGCTTTGCAAGCACA
AGTGCGTGGCCAACTTCACAACATACTCCAATGGCCGCCGCAGGAGAAACGTTCCCGGTGAACCTCTCTATCTGTGGCGT
GCTGACGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32149.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis