Browse Element(s) Details


OsAffx.32149.1.S1_x_at

Description tigr:9636.m03862
TID=OsAffx.32149.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3835011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g38300OsAffx.29587.1.S1_s_at11/118+24128481..24129312Histone H2B, putative, expressed
LOC_Os08g38300OsAffx.10929.1.S1_x_at2/118+24128481..24129312Histone H2B, putative, expressed
LOC_Os08g38310Os.53633.1.S1_x_at11/118+24130321..24137033expressed protein
LOC_Os08g38310OsAffx.17396.1.S1_at10/118+24130321..24137033expressed protein
LOC_Os08g38310OsAffx.17396.1.S1_x_at9/118+24130321..24137033expressed protein
LOC_Os08g38320Os.8660.1.S1_at11/118+24141188..24144560Protein kinase G11A, putative, expressed
LOC_Os08g38330OsAffx.32149.5.S1_at11/118+24146225..24147826F-box domain containing protein
LOC_Os08g38340Os.56244.1.S1_at11/118+24150017..24151534expressed protein
LOC_Os08g38350OsAffx.32149.1.S1_x_at11/118+24152694..24154403hypothetical protein
LOC_Os08g38350OsAffx.32149.1.S1_at11/118+24152694..24154403hypothetical protein
LOC_Os08g38350Os.29072.1.S1_at2/118+24152694..24154403hypothetical protein
LOC_Os08g38360OsAffx.32149.2.S1_at11/118+24155309..24156110F-box domain containing protein
LOC_Os08g38370OsAffx.17399.1.S1_at11/118+24158893..24161871Zinc finger C-x8-C-x5-C-x3-H type family protein
LOC_Os08g38380OsAffx.17399.2.S1_at11/118+24165537..24167260RNA recognition motif family protein
LOC_Os08g38400Os.8615.1.S1_at11/118+24178302..24181973Oligopeptide transporter 5, putative, expressed
LOC_Os08g38400Os.50452.2.S1_x_at1/118+24178302..24181973Oligopeptide transporter 5, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32149.1.S1_x_at--1000--7551Chr08:24153182..24153206 (25 bp)
GGGCGCCAATGTTGTGACCAAAAAT
LOC_Os08g38350
OsAffx.32149.1.S1_x_at--112--7391Chr08:24153169..24153193 (25 bp)
GTGACCAAAAATTCATCGCCGTGTG
LOC_Os08g38350
OsAffx.32149.1.S1_x_at--671--4371Chr08:24153165..24153189 (25 bp)
CCAAAAATTCATCGCCGTGTGGCTG
LOC_Os08g38350
OsAffx.32149.1.S1_x_at--181--8411Chr08:24153050..24153074 (25 bp)
GGCGCGCTGCTCATTGTCATCCAGG
LOC_Os08g38350
OsAffx.32149.1.S1_x_at--641--4131Chr08:24153046..24153070 (25 bp)
CGCTGCTCATTGTCATCCAGGCCGA
LOC_Os08g38350
OsAffx.32149.1.S1_x_at--950--3531Chr08:24152883..24152907 (25 bp)
CATCGTCGGCGAGTTCGACCAGGAA
LOC_Os08g38350
OsAffx.32149.1.S1_x_at--651--5511Chr08:24152861..24152885 (25 bp)
GAAAAGCAGCGGTGCCGCGACATCG
LOC_Os08g38350
OsAffx.32149.1.S1_x_at--864--8931Chr08:24152815..24152839 (25 bp)
TGACGCCCCTGAACGAGATGCACAA
LOC_Os08g38350
OsAffx.32149.1.S1_x_at--557--2571Chr08:24152804..24152828 (25 bp)
AACGAGATGCACAAGCGGAAAGGGC
LOC_Os08g38350
OsAffx.32149.1.S1_x_at--219--951Chr08:24152779..24152803 (25 bp)
AGGAAGCGGCGCTGCACACCGTCTG
LOC_Os08g38350
OsAffx.32149.1.S1_x_at--251--5391Chr08:24152724..24152748 (25 bp)
GAAGCTCCCCGGCAATTTGCGACGT
LOC_Os08g38350
Target Sequence 
GGGCGCCAATGTTGTGACCAAAAATTCATCGCCGTGTGGCTGCTCACGACCGAACGCCGGTGGAAGCGGCGGTGCGCGTT
CCGCAACGACTGGTGCTGGCCGGCGACTGTCGCCGGCGTCTGGGACTGCGGCGGCGCGCTGCTCATTGTCATCCAGGCCG
ACGACGAGAGCTCCATCTTCATGTACGACGACGCGACGGGCGAGGTGTCCCGGCTGAACCCGCCGCCCGACGCGTCGCCG
GAGAAGAGTGACTACCGGATCTGCTGGGGTTACAAGCCGACGGTCGTGACGCCGGCGAGCATCGTCGGCGAGTTCGACCA
GGAAAAGCAGCGGTGCCGCGACATCGCGGCGGATGTGCTCGCCGCCGTGACGCCCCTGAACGAGATGCACAAGCGGAAAG
GGCAGGAAGCGGCGCTGCACACCGTCTGCTTCATGGAGTTCTTGGTCGGTGTCATGCGGAAGCTCCCCGGCAATTTGCGA
CGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32149.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis