Browse Element(s) Details


OsAffx.17399.2.S1_at

Description tigr:9636.m03865
TID=OsAffx.17399.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3838011/11RNA recognition motif family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g38320Os.8660.1.S1_at11/118+24141188..24144560Protein kinase G11A, putative, expressed
LOC_Os08g38330OsAffx.32149.5.S1_at11/118+24146225..24147826F-box domain containing protein
LOC_Os08g38340Os.56244.1.S1_at11/118+24150017..24151534expressed protein
LOC_Os08g38350OsAffx.32149.1.S1_x_at11/118+24152694..24154403hypothetical protein
LOC_Os08g38350OsAffx.32149.1.S1_at11/118+24152694..24154403hypothetical protein
LOC_Os08g38350Os.29072.1.S1_at2/118+24152694..24154403hypothetical protein
LOC_Os08g38360OsAffx.32149.2.S1_at11/118+24155309..24156110F-box domain containing protein
LOC_Os08g38370OsAffx.17399.1.S1_at11/118+24158893..24161871Zinc finger C-x8-C-x5-C-x3-H type family protein
LOC_Os08g38380OsAffx.17399.2.S1_at11/118+24165537..24167260RNA recognition motif family protein
LOC_Os08g38400Os.8615.1.S1_at11/118+24178302..24181973Oligopeptide transporter 5, putative, expressed
LOC_Os08g38400Os.50452.2.S1_x_at1/118+24178302..24181973Oligopeptide transporter 5, putative, expressed
LOC_Os08g38410Os.26860.1.S1_at11/118+24180502..24185908RNA recognition motif family protein, expressed
LOC_Os08g38410Os.53794.1.S1_at11/118+24180502..24185908RNA recognition motif family protein, expressed
LOC_Os08g38420OsAffx.17401.1.S1_at11/118+24188202..24188492hypothetical protein
LOC_Os08g38430OsAffx.6067.1.S1_x_at11/118+24191589..24192401hypothetical protein
LOC_Os08g38430OsAffx.6067.1.S1_at11/118+24191589..24192401hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17399.2.S1_at--271--8411Chr08:24166097..24166121 (25 bp)
GGCCCATTGCCAGAGGATTCTTTAG
LOC_Os08g38380
OsAffx.17399.2.S1_at--609--5631Chr08:24165920..24165944 (25 bp)
GACACTTTCCACTTTTCTGATAGAC
LOC_Os08g38380
OsAffx.17399.2.S1_at--999--6231Chr08:24165884..24165908 (25 bp)
GATGGCAGAATCAACCCCAATATCT
LOC_Os08g38380
OsAffx.17399.2.S1_at--675--9752Chr08:24165850..24165874 (25 bp)
TAATAAATAAAACTCCTCCTCCTGC
LOC_Os08g38380
OsAffx.17399.2.S1_at--835--9111Chr08:24165828..24165852 (25 bp)
TGCTGCATGTGCTTACTCCTACAAC
LOC_Os08g38380
OsAffx.17399.2.S1_at--329--2971Chr08:24165764..24165788 (25 bp)
AATGGTTCTTGCAACTATCCTACAT
LOC_Os08g38380
OsAffx.17399.2.S1_at--1047--591Chr08:24165741..24165765 (25 bp)
ATGCCCCAAGTCCTATCATGGATCA
LOC_Os08g38380
OsAffx.17399.2.S1_at--820--3071Chr08:24165710..24165734 (25 bp)
AATCAAACACATTTTCCTCATCCGG
LOC_Os08g38380
OsAffx.17399.2.S1_at--403--8331Chr08:24165687..24165711 (25 bp)
GGCTGCATATGCTTACTCCTGCAAC
LOC_Os08g38380
OsAffx.17399.2.S1_at--197--9271Chr08:24165671..24165695 (25 bp)
TCCTGCAACCGAACTGGAGGCATTG
LOC_Os08g38380
OsAffx.17399.2.S1_at--999--6651Chr08:24165594..24165618 (25 bp)
GTTGAATCCCAATTTCTATCGTGGA
LOC_Os08g38380
Target Sequence 
GGCCCATTGCCAGAGGATTCTTTAGAAAGAGGGCTTTTGAAGTACCTAAAACAATTTGGATCCGTGGATGCTGGAATGCT
GATCATTGATTGTATCATCAAATATATCTCCAGAGATGGGCAAGAGTTAACTGTGAAGATTGACAAGTCCAAAAATGCAG
CTTGGTCAACCTGTGAAGACACTTTCCACTTTTCTGATAGACGCAAGAACAGCGATGGCAGAATCAACCCCAATATCTAC
CGTGGATTAATAAATAAAACTCCTCCTCCTGCTGCATGTGCTTACTCCTACAACCGAACTGGAGGCATTGCCGGAAAAAA
ATGCAACATCCCCAATGGTTCTTGCAACTATCCTACATGCCCCAAGTCCTATCATGGATCAATTGTGAATCAAACACATT
TTCCTCATCCGGCTGCATATGCTTACTCCTGCAACCGAACTGGAGGCATTGCGGAACAAATGTGCAACATTCCCAATGGT
TTTTGCAACTATCCTACATACAAGTTGAATCCCAATTTCTATCGTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17399.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis