Browse Element(s) Details


Os.56244.1.S1_at

Description gb:AK109684.1
DB_XREF= gi:32994893
TID=Os.56244.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56244 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-145-D08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-145-D08, full insert sequence.
FL= gb:AK109684.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3834011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g38289NANA8+24125232..24126109hypothetical protein
LOC_Os08g38300OsAffx.29587.1.S1_s_at11/118+24128481..24129312Histone H2B, putative, expressed
LOC_Os08g38300OsAffx.10929.1.S1_x_at2/118+24128481..24129312Histone H2B, putative, expressed
LOC_Os08g38310Os.53633.1.S1_x_at11/118+24130321..24137033expressed protein
LOC_Os08g38310OsAffx.17396.1.S1_at10/118+24130321..24137033expressed protein
LOC_Os08g38310OsAffx.17396.1.S1_x_at9/118+24130321..24137033expressed protein
LOC_Os08g38320Os.8660.1.S1_at11/118+24141188..24144560Protein kinase G11A, putative, expressed
LOC_Os08g38330OsAffx.32149.5.S1_at11/118+24146225..24147826F-box domain containing protein
LOC_Os08g38340Os.56244.1.S1_at11/118+24150017..24151534expressed protein
LOC_Os08g38350OsAffx.32149.1.S1_x_at11/118+24152694..24154403hypothetical protein
LOC_Os08g38350OsAffx.32149.1.S1_at11/118+24152694..24154403hypothetical protein
LOC_Os08g38350Os.29072.1.S1_at2/118+24152694..24154403hypothetical protein
LOC_Os08g38360OsAffx.32149.2.S1_at11/118+24155309..24156110F-box domain containing protein
LOC_Os08g38370OsAffx.17399.1.S1_at11/118+24158893..24161871Zinc finger C-x8-C-x5-C-x3-H type family protein
LOC_Os08g38380OsAffx.17399.2.S1_at11/118+24165537..24167260RNA recognition motif family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56244.1.S1_at--66--531Chr08:24150964..24150988 (25 bp)
ATCGAGATGAAGCTCCTGACCCGGG
LOC_Os08g38340
Os.56244.1.S1_at--463--8991Chr08:24150971..24150995 (25 bp)
TGAAGCTCCTGACCCGGGACAGCAA
LOC_Os08g38340
Os.56244.1.S1_at--415--5311Chr08:24151089..24151113 (25 bp)
GAAGGAGCTCTTCAATAGCATCACG
LOC_Os08g38340
Os.56244.1.S1_at--1065--9551Chr08:24151097..24151121 (25 bp)
TCTTCAATAGCATCACGACGTTCCT
LOC_Os08g38340
Os.56244.1.S1_at--720--8731Chr08:24151295..24151319 (25 bp)
TGATAGGGCAGGTGTTCGTCGTCAA
LOC_Os08g38340
Os.56244.1.S1_at--906--8451Chr08:24151331..24151355 (25 bp)
TGGCCATGGATCACAAGAAGAAGGT
LOC_Os08g38340
Os.56244.1.S1_at--79--8552Chr08:24151355..24151379 (25 bp)
TGGAGAAGCAGAGGACGCTCAACAG
LOC_Os08g38340
Os.56244.1.S1_at--515--2131Chr08:24151376..24151400 (25 bp)
ACAGGGAGCGCTCCATTGTCTCTGA
LOC_Os08g38340
Os.56244.1.S1_at--539--8931Chr08:24151398..24151422 (25 bp)
TGACCTCAAGCATGGATCTTCTCAT
LOC_Os08g38340
Os.56244.1.S1_at--745--3131Chr08:24151442..24151466 (25 bp)
AATTTTGGGCAAAGCTGAGTCAGTG
LOC_Os08g38340
Os.56244.1.S1_at--194--4731Chr08:24151455..24151479 (25 bp)
GCTGAGTCAGTGCATGTAAAGTTAT
LOC_Os08g38340
Target Sequence 
ATCGAGATGAAGCTCCTGACCCGGGACAGCAACGGCGCCCTCATCTCCGGCGTGGCGGCCAGAGCGTCCGAGCTCGCCAA
CGAAGCCGCCGGAGCGGGCGTCGGCAAGGCCAACTTCGTCGAGCAGAAGGAGCTCTTCAATAGCATCACGACGTTCCTCG
CCGGCGGCAAGGCACCGGCGAGCTCGGTGCGCGCGTCGTCGTCCCACCACGGGCGGCTGACGGCGTCGACATGGACGGAC
ATTGTCCGGCTCAACTTCCTCCGGCGATTCCTCGGCGGCGGGTTCCTGCCGCACCTCCAGGGGAAGGTGCTGATGGGGGA
GGAGGCGCCGCTGATAGGGCAGGTGTTCGTCGTCAAGGAGGACGACATGGCCATGGATCACAAGAAGAAGGTGGAGAAGC
AGAGGACGCTCAACAGGGAGCGCTCCATTGTCTCTGACCTCAAGCATGGATCTTCTCATGTATGAAAACTAGGAAAGGAA
TTTTGGGCAAAGCTGAGTCAGTGCATGTAAAGTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56244.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis