Browse Element(s) Details


OsAffx.17399.1.S1_at

Description tigr:9636.m03864
TID=OsAffx.17399.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to C-x8-C-x5-C-x3-H type Zinc finger protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3837011/11Zinc finger C-x8-C-x5-C-x3-H type family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g38310Os.53633.1.S1_x_at11/118+24130321..24137033expressed protein
LOC_Os08g38310OsAffx.17396.1.S1_at10/118+24130321..24137033expressed protein
LOC_Os08g38310OsAffx.17396.1.S1_x_at9/118+24130321..24137033expressed protein
LOC_Os08g38320Os.8660.1.S1_at11/118+24141188..24144560Protein kinase G11A, putative, expressed
LOC_Os08g38330OsAffx.32149.5.S1_at11/118+24146225..24147826F-box domain containing protein
LOC_Os08g38340Os.56244.1.S1_at11/118+24150017..24151534expressed protein
LOC_Os08g38350OsAffx.32149.1.S1_x_at11/118+24152694..24154403hypothetical protein
LOC_Os08g38350OsAffx.32149.1.S1_at11/118+24152694..24154403hypothetical protein
LOC_Os08g38350Os.29072.1.S1_at2/118+24152694..24154403hypothetical protein
LOC_Os08g38360OsAffx.32149.2.S1_at11/118+24155309..24156110F-box domain containing protein
LOC_Os08g38370OsAffx.17399.1.S1_at11/118+24158893..24161871Zinc finger C-x8-C-x5-C-x3-H type family protein
LOC_Os08g38380OsAffx.17399.2.S1_at11/118+24165537..24167260RNA recognition motif family protein
LOC_Os08g38400Os.8615.1.S1_at11/118+24178302..24181973Oligopeptide transporter 5, putative, expressed
LOC_Os08g38400Os.50452.2.S1_x_at1/118+24178302..24181973Oligopeptide transporter 5, putative, expressed
LOC_Os08g38410Os.26860.1.S1_at11/118+24180502..24185908RNA recognition motif family protein, expressed
LOC_Os08g38410Os.53794.1.S1_at11/118+24180502..24185908RNA recognition motif family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003676molecular_functionnucleic acid binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17399.1.S1_at--818--8431Chr08:24160664..24160688 (25 bp)
GGCCAGGGCATCATGTTTCAGCGAG
LOC_Os08g38370
OsAffx.17399.1.S1_at--685--1051Chr08:24160734..24160758 (25 bp)
AGGGTGGTTACGGACAAGGCTTCAT
LOC_Os08g38370
OsAffx.17399.1.S1_at--4--2951Chr08:24160749..24160773 (25 bp)
AAGGCTTCATGTTTCCGCAGGCTCA
LOC_Os08g38370
OsAffx.17399.1.S1_at--255--8971Chr08:24160839..24160978 (25 bp)
TGAACATGCAGGCTCCTTACGACGG
LOC_Os08g38370
OsAffx.17399.1.S1_at--608--5411Chr08:24161000..24161024 (25 bp)
GAAGCCGCAGCACTATCACCATGGG
LOC_Os08g38370
OsAffx.17399.1.S1_at--281--1731Chr08:24161017..24161041 (25 bp)
ACCATGGGCATGTTCCGAGCGAGAA
LOC_Os08g38370
OsAffx.17399.1.S1_at--891--2411Chr08:24161188..24161212 (25 bp)
AAAAACTGTCATGTGCCCGGACTGG
LOC_Os08g38370
OsAffx.17399.1.S1_at--130--2631Chr08:24161218..24161242 (25 bp)
AACCGGACATTGTTCCTCTGGTGAC
LOC_Os08g38370
OsAffx.17399.1.S1_at--40--1931Chr08:24161241..24161265 (25 bp)
ACGGGTGCGAATATGCTCACAGTCA
LOC_Os08g38370
OsAffx.17399.1.S1_at--731--1171Chr08:24161298..24161322 (25 bp)
AGTACAGAACAGAGCCGTGCCGTTA
LOC_Os08g38370
OsAffx.17399.1.S1_at--2--7651Chr08:24161388..24161412 (25 bp)
GGGAGCCACTGTATGTCGATCCATT
LOC_Os08g38370
Target Sequence 
GGCCAGGGCATCATGTTTCAGCGAGGTGGCTACCTCCAGGATGTCCCGTTCCAGCACTGGCAGTGGCAGCAGGGTGGTTA
CGGACAAGGCTTCATGTTTCCGCAGGCTCAGCATCAAGGTGGCTACGGCCAAGGTTTCCTGTCCGAGCAGCCGCTGCCCG
GTGACCCCAGCTTCATGAACATGCAGGCTCCTTACGACGGCGACGGGGGAGTCCTGTTCCAGAAGCCGCAGCACTATCAC
CATGGGCATGTTCCGAGCGAGAAGGGCGCTATTCAGGCCAAGGGGAAGCAGAAGATGCGGGAACCAAAAACTGTCATGTG
CCCGGACTGGTGCAGAACCGGACATTGTTCCTCTGGTGACGGGTGCGAATATGCTCACAGTCAAGACGAACTGCGGGTAA
TCGACGCCCGCCCCAAGTACAGAACAGAGCCGTGCCGTTACTGGCTAGCTGGGAAAGGGTGCTGGTATGGGGACAAATGC
CGGTACAAGCAGCACCGATTAGCTCGGGAGCCACTGTATGTCGATCCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17399.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis