Browse Element(s) Details


Os.8615.1.S1_at

Description gb:AK100814.1
DB_XREF= gi:32986023
TID=Os.8615.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8615 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023122C04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023122C04, full insert sequence.
FL= gb:AK100814.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3840011/11Oligopeptide transporter 5, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g38350OsAffx.32149.1.S1_x_at11/118+24152694..24154403hypothetical protein
LOC_Os08g38350OsAffx.32149.1.S1_at11/118+24152694..24154403hypothetical protein
LOC_Os08g38350Os.29072.1.S1_at2/118+24152694..24154403hypothetical protein
LOC_Os08g38360OsAffx.32149.2.S1_at11/118+24155309..24156110F-box domain containing protein
LOC_Os08g38370OsAffx.17399.1.S1_at11/118+24158893..24161871Zinc finger C-x8-C-x5-C-x3-H type family protein
LOC_Os08g38380OsAffx.17399.2.S1_at11/118+24165537..24167260RNA recognition motif family protein
LOC_Os08g38400Os.8615.1.S1_at11/118+24178302..24181973Oligopeptide transporter 5, putative, expressed
LOC_Os08g38400Os.50452.2.S1_x_at1/118+24178302..24181973Oligopeptide transporter 5, putative, expressed
LOC_Os08g38410Os.26860.1.S1_at11/118+24180502..24185908RNA recognition motif family protein, expressed
LOC_Os08g38410Os.53794.1.S1_at11/118+24180502..24185908RNA recognition motif family protein, expressed
LOC_Os08g38420OsAffx.17401.1.S1_at11/118+24188202..24188492hypothetical protein
LOC_Os08g38430OsAffx.6067.1.S1_x_at11/118+24191589..24192401hypothetical protein
LOC_Os08g38430OsAffx.6067.1.S1_at11/118+24191589..24192401hypothetical protein
LOC_Os08g38440OsAffx.17402.1.S1_at11/118+24193968..24199447C2 domain containing protein, expressed
LOC_Os08g38450NANA8+24200711..24201460hypothetical protein
LOC_Os08g38460Os.52151.1.S1_at11/118+24203170..24204185Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006857biological_processoligopeptide transport
GO:0016020cellular_componentmembrane
GO:0015198molecular_functionoligopeptide transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8615.1.S1_at--52--7971Chr08:24181411..24181435 (25 bp)
GGATCGGGCTCGTCAACATGCCGGT
LOC_Os08g38400
Os.8615.1.S1_at--974--4611Chr08:24181467..24181491 (25 bp)
GCGAGGTCGGTGAACTACCTCATGT
LOC_Os08g38400
Os.8615.1.S1_at--710--2531Chr08:24181560..24181584 (25 bp)
AACTACGTGCTGTCCGCCGGGCTGG
LOC_Os08g38400
Os.8615.1.S1_at--804--7771Chr08:24181736..24181760 (25 bp)
GGTGCAGTGAGCAGAGCAGACCATT
LOC_Os08g38400
Os.8615.1.S1_at--312--5051Chr08:24181751..24181775 (25 bp)
GCAGACCATTGGCATCAATCAGCTG
LOC_Os08g38400
Os.8615.1.S1_at--1102--9651Chr08:24181769..24181793 (25 bp)
TCAGCTGGGAAAACTTAGGGCAGTT
LOC_Os08g38400
Os.8615.1.S1_at--481--10191Chr08:24181799..24181823 (25 bp)
TATAGGTCTATATAGCTCCTCAAGT
LOC_Os08g38400
Os.8615.1.S1_at--148--5531Chr08:24181856..24181880 (25 bp)
GAAAAGATCAGCACACAGCACTACT
LOC_Os08g38400
Os.8615.1.S1_at--289--3331Chr08:24181874..24181898 (25 bp)
CACTACTGTGTAATTGTGCGTAAAA
LOC_Os08g38400
Os.8615.1.S1_at--579--2671Chr08:24181902..24181926 (25 bp)
AAGCGCCGTATGTAACTATGTATGT
LOC_Os08g38400
Os.8615.1.S1_at--1072--8731Chr08:24181949..24181973 (25 bp)
TGTCAAACGCATGTGCTTGTTCTGC
LOC_Os08g38400
Target Sequence 
GGATCGGGCTCGTCAACATGCCGGTGCTCCTCGGCGCCACGGGGATGATGCCGCCGGCGAGGTCGGTGAACTACCTCATG
TGGGGNNCCGTGGGNCTCGCCTTNNANTACGTCGTGTACCGNCCGGTACAAGGGNTGNTGGGCNCGNCACAACTACGTGC
TGTCCGCCGGGCTGGACGCCGGCGTGGCCTTCATGGGGATCCTCTCGTACGCCGTGCTGCAGTCGAGGGGCATCAATGGC
GTCAACTGGTGGGGGCTGCAGGTGGACGACCACTGCGCCCTGGCTCGTTGCCCCACGGCGCCCGGGGTCAGCGCCCCCGG
CTGCCCGGTGCAGTGAGCAGAGCAGACCATTGGCATCAATCAGCTGGGAAAACTTAGGGCAGTTAGGATTATAGGTCTAT
ATAGCTCCTCAAGTTTATAAATGATCGTTGACCAAAAATGGCATTGGAAAAGATCAGCACACAGCACTACTGTGTAATTG
TGCGTAAAACAAAAGCGCCGTATGTAACTATGTATGTAGTGATGAATAGTCTGATTATATGTCAAACGCATGTGCTTGTT
CTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8615.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis