Browse Element(s) Details


OsAffx.17402.1.S1_at

Description tigr:9636.m03872
TID=OsAffx.17402.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Contains similarity to gb|AB011110 KIAA0538 protein from Homo sapiens brain and to phospholipid-binding domain C2 PF|00168. ESTs gb|AA585988 and gb|T04384 come from this gene.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3844011/11C2 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g38400Os.8615.1.S1_at11/118+24178302..24181973Oligopeptide transporter 5, putative, expressed
LOC_Os08g38400Os.50452.2.S1_x_at1/118+24178302..24181973Oligopeptide transporter 5, putative, expressed
LOC_Os08g38410Os.26860.1.S1_at11/118+24180502..24185908RNA recognition motif family protein, expressed
LOC_Os08g38410Os.53794.1.S1_at11/118+24180502..24185908RNA recognition motif family protein, expressed
LOC_Os08g38420OsAffx.17401.1.S1_at11/118+24188202..24188492hypothetical protein
LOC_Os08g38430OsAffx.6067.1.S1_x_at11/118+24191589..24192401hypothetical protein
LOC_Os08g38430OsAffx.6067.1.S1_at11/118+24191589..24192401hypothetical protein
LOC_Os08g38440OsAffx.17402.1.S1_at11/118+24193968..24199447C2 domain containing protein, expressed
LOC_Os08g38450NANA8+24200711..24201460hypothetical protein
LOC_Os08g38460Os.52151.1.S1_at11/118+24203170..24204185Zinc finger, C3HC4 type family protein, expressed
LOC_Os08g38470OsAffx.17404.2.S1_at11/118+24213862..24215185F-box domain containing protein
LOC_Os08g38480Os.50479.1.S1_at11/118+24218884..24222997F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17402.1.S1_at--852--6071Chr08:24198022..24198046 (25 bp)
GAGTCGAGGATGCAAAGAACCTTCA
LOC_Os08g38440
OsAffx.17402.1.S1_at--20--1311Chr08:24198046..24198070 (25 bp)
AGATGAACGAGGTTTTCTCCTCCTC
LOC_Os08g38440
OsAffx.17402.1.S1_at--352--4391Chr08:24197705..24198219 (25 bp)
GCCAATATGGCCTCACTAATGGAAG
LOC_Os08g38440
OsAffx.17402.1.S1_at--146--7991Chr08:24198264..24198288 (25 bp)
GGATGCCTAAATTATTCAGCCACAC
LOC_Os08g38440
OsAffx.17402.1.S1_at--691--6751Chr08:24198338..24198362 (25 bp)
GTTCAGCAGGAAGTTGTCTCCCATT
LOC_Os08g38440
OsAffx.17402.1.S1_at--841--5331Chr08:24198347..24198371 (25 bp)
GAAGTTGTCTCCCATTGGAGGTGAA
LOC_Os08g38440
OsAffx.17402.1.S1_at--435--5451Chr08:24198379..24198403 (25 bp)
GAACCCAGCAGAAATCTCCTATGCC
LOC_Os08g38440
OsAffx.17402.1.S1_at--662--9491Chr08:24198393..24198417 (25 bp)
TCTCCTATGCCCAACAAGGCAGGGT
LOC_Os08g38440
OsAffx.17402.1.S1_at--136--3211Chr08:24198444..24198468 (25 bp)
CAAGGAATCCTTTTCGGTGACTTCT
LOC_Os08g38440
OsAffx.17402.1.S1_at--611--7371Chr08:24198460..24198944 (25 bp)
GTGACTTCTTCACGATTCATATACG
LOC_Os08g38440
OsAffx.17402.1.S1_at--783--7571Chr08:24198977..24199001 (25 bp)
GGGCGTGTAGTGTACAAGTCTTTCT
LOC_Os08g38440
Target Sequence 
GAGTCGAGGATGCAAAGAACCTTCAGATGAACGAGGTTTTCTCCTCCTCGATTTCTGCCAATATGGCCTCACTAATGGAA
GTGTTTGGAGGAGGTTCATTTGAGATGAAAATCATGAATAAAGTTGGATGCCTAAATTATTCAGCCACACAGTGGGAATC
AGATAAGCCTGATGAATATCAAAGACAAATTCATTACAAGTTCAGCAGGAAGTTGTCTCCCATTGGAGGTGAAGTGACTG
GAACCCAGCAGAAATCTCCTATGCCCAACAAGGCAGGGTGGATTATTGAAGAGGTGATGGAACTACAAGGAATCCTTTTC
GGTGACTTCTTCACGATTCATATACGGTATCAGATCGAAGACCTTGCTCCTAAACAGAGGGCGTGTAGTGTACAAGTCTT
TCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17402.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis