Browse Element(s) Details


Os.52151.1.S1_at

Description gb:AK065316.1
DB_XREF= gi:32975334
TID=Os.52151.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52151 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013002P08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013002P08, full insert sequence.
FL= gb:AK065316.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3846011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g38400Os.8615.1.S1_at11/118+24178302..24181973Oligopeptide transporter 5, putative, expressed
LOC_Os08g38400Os.50452.2.S1_x_at1/118+24178302..24181973Oligopeptide transporter 5, putative, expressed
LOC_Os08g38410Os.26860.1.S1_at11/118+24180502..24185908RNA recognition motif family protein, expressed
LOC_Os08g38410Os.53794.1.S1_at11/118+24180502..24185908RNA recognition motif family protein, expressed
LOC_Os08g38420OsAffx.17401.1.S1_at11/118+24188202..24188492hypothetical protein
LOC_Os08g38430OsAffx.6067.1.S1_x_at11/118+24191589..24192401hypothetical protein
LOC_Os08g38430OsAffx.6067.1.S1_at11/118+24191589..24192401hypothetical protein
LOC_Os08g38440OsAffx.17402.1.S1_at11/118+24193968..24199447C2 domain containing protein, expressed
LOC_Os08g38450NANA8+24200711..24201460hypothetical protein
LOC_Os08g38460Os.52151.1.S1_at11/118+24203170..24204185Zinc finger, C3HC4 type family protein, expressed
LOC_Os08g38470OsAffx.17404.2.S1_at11/118+24213862..24215185F-box domain containing protein
LOC_Os08g38480Os.50479.1.S1_at11/118+24218884..24222997F-box domain containing protein, expressed
LOC_Os08g38490OsAffx.6069.1.S1_x_at11/118+24224758..24225912F-box domain containing protein
LOC_Os08g38490OsAffx.6069.1.S1_at11/118+24224758..24225912F-box domain containing protein
LOC_Os08g38500NANA8+24226865..24227287transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52151.1.S1_at--212--5971Chr08:24203617..24203641 (25 bp)
GAGAAGTGGCTCGACTACGACCACG
LOC_Os08g38460
Os.52151.1.S1_at--912--191Chr08:24203511..24203535 (25 bp)
ATTTCGCCCGGATTTAGAGAGATCT
LOC_Os08g38460
Os.52151.1.S1_at--76--10511Chr08:24203480..24203504 (25 bp)
TTCAATCCGCCACTGGGCCGTGTGC
LOC_Os08g38460
Os.52151.1.S1_at--1057--6011Chr08:24203442..24203466 (25 bp)
GAGAGGATCATTTAGCTCTAGTGCT
LOC_Os08g38460
Os.52151.1.S1_at--677--4811Chr08:24203428..24203452 (25 bp)
GCTCTAGTGCTAGCTCCATTTAGTG
LOC_Os08g38460
Os.52151.1.S1_at--233--10011Chr08:24203418..24203442 (25 bp)
TAGCTCCATTTAGTGCTCCTTTTTC
LOC_Os08g38460
Os.52151.1.S1_at--311--10351Chr08:24203348..24203372 (25 bp)
TTTACCATCTTCGAGTGGCCTTTTC
LOC_Os08g38460
Os.52151.1.S1_at--913--8671Chr08:24203295..24203319 (25 bp)
TGTGTTGCTGCTGTACCATTGTAAA
LOC_Os08g38460
Os.52151.1.S1_at--845--231Chr08:24203271..24203295 (25 bp)
ATATTTGCAGAGTGCTCCGATCGAT
LOC_Os08g38460
Os.52151.1.S1_at--732--4051Chr08:24203254..24203278 (25 bp)
CGATCGATGGAGAGGTGTAGCACTT
LOC_Os08g38460
Os.52151.1.S1_at--942--5111Chr08:24203235..24203259 (25 bp)
GCACTTGTGTACAGGGCTTTTGGAA
LOC_Os08g38460
Target Sequence 
GAGAAGTGGCTCGACTACGACCACGCCACCTGCCCGCTCTGCCGCCACCGCCTCCTCCCCGCCACCACCGAGTCCCCCTC
GCCGTCGCCGGCGACGGCGACCCCCCATTTCGCCCGGATTTAGAGAGATCTCCCCCCTTCAATCCGCCACTGGGCCGTGT
GCGCGTAGGAAAATTGAGAGGATCATTTAGCTCTAGTGCTAGCTCCATTTAGTGCTCCTTTTTCCCCCCACTTTCTTAAT
TTTTTTTTCACCTCTTTGCAGTGTTTTTTTTTACCATCTTCGAGTGGCCTTTTCTTTTCTTTTCTTTCTTTTTTTACTTC
TTTGTGTTGCTGCTGTACCATTGTAAATATTTGCAGAGTGCTCCGATCGATGGAGAGGTGTAGCACTTGTGTACAGGGCT
TTTGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52151.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis