Browse Element(s) Details


OsAffx.17404.2.S1_at

Description tigr:9636.m03875
TID=OsAffx.17404.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3847011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g38430OsAffx.6067.1.S1_x_at11/118+24191589..24192401hypothetical protein
LOC_Os08g38430OsAffx.6067.1.S1_at11/118+24191589..24192401hypothetical protein
LOC_Os08g38440OsAffx.17402.1.S1_at11/118+24193968..24199447C2 domain containing protein, expressed
LOC_Os08g38450NANA8+24200711..24201460hypothetical protein
LOC_Os08g38460Os.52151.1.S1_at11/118+24203170..24204185Zinc finger, C3HC4 type family protein, expressed
LOC_Os08g38470OsAffx.17404.2.S1_at11/118+24213862..24215185F-box domain containing protein
LOC_Os08g38480Os.50479.1.S1_at11/118+24218884..24222997F-box domain containing protein, expressed
LOC_Os08g38490OsAffx.6069.1.S1_x_at11/118+24224758..24225912F-box domain containing protein
LOC_Os08g38490OsAffx.6069.1.S1_at11/118+24224758..24225912F-box domain containing protein
LOC_Os08g38500NANA8+24226865..24227287transposon protein, putative, unclassified
LOC_Os08g38510OsAffx.29590.1.S1_at11/118+24231512..24231967hypothetical protein
LOC_Os08g38520OsAffx.29591.1.S1_at11/118+24233129..24233974F-box domain containing protein
LOC_Os08g38520OsAffx.29591.1.S1_x_at11/118+24233129..24233974F-box domain containing protein
LOC_Os08g38530Os.15237.1.S1_at3/118+24234688..24236129hypothetical protein
LOC_Os08g38540OsAffx.17405.1.S1_at10/118+24237384..24239114hypothetical protein
LOC_Os08g38550OsAffx.6070.1.S1_at9/118+24239968..24243475hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17404.2.S1_at--41--1951Chr08:24214508..24214532 (25 bp)
ACGGCGTGGCGTACTGGATCACCGC
LOC_Os08g38470
OsAffx.17404.2.S1_at--1086--6431Chr08:24214548..24214572 (25 bp)
GATCATGTCGCTCGATCTCAAGGAC
LOC_Os08g38470
OsAffx.17404.2.S1_at--57--9051Chr08:24214627..24214651 (25 bp)
TGCAGCTACCGCCTGACGGAGATGC
LOC_Os08g38470
OsAffx.17404.2.S1_at--308--6051Chr08:24214893..24214917 (25 bp)
GAGATCAACGGTGGACTCGCAGATA
LOC_Os08g38470
OsAffx.17404.2.S1_at--513--7731Chr08:24214902..24214926 (25 bp)
GGTGGACTCGCAGATACAACATAAT
LOC_Os08g38470
OsAffx.17404.2.S1_at--474--5551Chr08:24214931..24214955 (25 bp)
GAAACGCCCAAGCAGCACGTGATGT
LOC_Os08g38470
OsAffx.17404.2.S1_at--929--8871Chr08:24214950..24214974 (25 bp)
TGATGTGGCCGCTGTTTGCACACGG
LOC_Os08g38470
OsAffx.17404.2.S1_at--196--771Chr08:24214980..24215004 (25 bp)
ATGTCCTAACAGTGGCGCAGGTGTT
LOC_Os08g38470
OsAffx.17404.2.S1_at--895--8031Chr08:24215008..24215032 (25 bp)
GGAGTATAACCTGCACAAGCACAAG
LOC_Os08g38470
OsAffx.17404.2.S1_at--912--6031Chr08:24215096..24215120 (25 bp)
GAGATCATGAACTACGGCGTCGCTG
LOC_Os08g38470
OsAffx.17404.2.S1_at--347--7231Chr08:24215114..24215138 (25 bp)
GTCGCTGACCACACCGGGATCAGTA
LOC_Os08g38470
Target Sequence 
ACGGCGTGGCGTACTGGATCACCGCCGGGACGCCGGCGGCGATCATGTCGCTCGATCTCAAGGACAACCGCGTCGCGCCC
GTCAAGTGGTCGCCGGAGACGCCGGGGCGCGGGTGCAGGTGCAGCTACCGCCTGACGGAGATGCGCGGGAGGCTCTGCGT
CGCGGTCACCGTGGAAGAGACGGAGAAGCCAACTAAAAGGGTGGAGGTGTGGTGGATGGAGAGCACAAGAGATCAACGGT
GGACTCGCAGATACAACATAATGCTAGAAACGCCCAAGCAGCACGTGATGTGGCCGCTGTTTGCACACGGGGAGAATGTC
CTAACAGTGGCGCAGGTGTTCAAGGAGTATAACCTGCACAAGCACAAGGTGAGCGACAAGAGGAGCTCGCAGTGCAGCAT
GGTGAAGATATGGAAGAAGAAGCCGGGAGTGGAGATCATGAACTACGGCGTCGCTGACCACACCGGGATCAGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17404.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis