Browse Element(s) Details


Os.50479.1.S1_at

Description gb:AK121365.1
DB_XREF= gi:37990988
TID=Os.50479.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50479 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-149-A09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023125F02, full insert sequence.
FL= gb:AK108678.1 gb:AK121365.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3848011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g38440OsAffx.17402.1.S1_at11/118+24193968..24199447C2 domain containing protein, expressed
LOC_Os08g38450NANA8+24200711..24201460hypothetical protein
LOC_Os08g38460Os.52151.1.S1_at11/118+24203170..24204185Zinc finger, C3HC4 type family protein, expressed
LOC_Os08g38470OsAffx.17404.2.S1_at11/118+24213862..24215185F-box domain containing protein
LOC_Os08g38480Os.50479.1.S1_at11/118+24218884..24222997F-box domain containing protein, expressed
LOC_Os08g38490OsAffx.6069.1.S1_x_at11/118+24224758..24225912F-box domain containing protein
LOC_Os08g38490OsAffx.6069.1.S1_at11/118+24224758..24225912F-box domain containing protein
LOC_Os08g38500NANA8+24226865..24227287transposon protein, putative, unclassified
LOC_Os08g38510OsAffx.29590.1.S1_at11/118+24231512..24231967hypothetical protein
LOC_Os08g38520OsAffx.29591.1.S1_at11/118+24233129..24233974F-box domain containing protein
LOC_Os08g38520OsAffx.29591.1.S1_x_at11/118+24233129..24233974F-box domain containing protein
LOC_Os08g38530Os.15237.1.S1_at3/118+24234688..24236129hypothetical protein
LOC_Os08g38540OsAffx.17405.1.S1_at10/118+24237384..24239114hypothetical protein
LOC_Os08g38550OsAffx.6070.1.S1_at9/118+24239968..24243475hypothetical protein
LOC_Os08g38560Os.7659.1.S1_s_at5/118+24246249..24249917Leucine Rich Repeat family protein, expressed
LOC_Os08g38560Os.56750.1.S1_at5/118+24246249..24249917Leucine Rich Repeat family protein, expressed
LOC_Os08g38560OsAffx.30096.1.S1_x_at1/118+24246249..24249917Leucine Rich Repeat family protein, expressed
LOC_Os08g38560Os.56726.1.S1_x_at1/118+24246249..24249917Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50479.1.S1_at--1154--4371Chr08:24221487..24221511 (25 bp)
CCAATGCAATGGTGGATCTAAGATT
LOC_Os08g38480
Os.50479.1.S1_at--628--2591Chr08:24221527..24221551 (25 bp)
AACGATGAGGAGATGGCTACAGGTA
LOC_Os08g38480
Os.50479.1.S1_at--1029--3271Chr08:24222485..24222509 (25 bp)
CAGGTAAGACGACATCTCTAGGGCA
LOC_Os08g38480
Os.50479.1.S1_at--693--631Chr08:24222511..24222535 (25 bp)
ATGCTAACCTCCATGTTCAATGACC
LOC_Os08g38480
Os.50479.1.S1_at--564--8771Chr08:24222524..24222548 (25 bp)
TGTTCAATGACCTCCCAAGTCCTCA
LOC_Os08g38480
Os.50479.1.S1_at--886--2651Chr08:24222553..24222577 (25 bp)
AAGCGCCCGGTTGCCAGGCGAAGAA
LOC_Os08g38480
Os.50479.1.S1_at--572--8371Chr08:24222581..24222605 (25 bp)
GGCGAACCAATCGTTTTAAGTGACG
LOC_Os08g38480
Os.50479.1.S1_at--995--1091Chr08:24222599..24222623 (25 bp)
AGTGACGGATTGTCTACCGGAGTAC
LOC_Os08g38480
Os.50479.1.S1_at--710--7911Chr08:24222617..24222641 (25 bp)
GGAGTACTTTCGGTATGTCCGAACA
LOC_Os08g38480
Os.50479.1.S1_at--187--1071Chr08:24222645..24222669 (25 bp)
AGGGATACTGTGTCACCAGACCAAG
LOC_Os08g38480
Os.50479.1.S1_at--446--6131Chr08:24222871..24222895 (25 bp)
GAGGGAGTACCATTTAACCTGCTTA
LOC_Os08g38480
Target Sequence 
CCAATGCAATGGTGGATCTAAGATTGGAAGTGTGGTTAATAACGATGAGGAGATGGCTACAGGTAAGACGACATCTCTAG
GGCAAATGCTAACCTCCATGTTCAATGACCTCCCAAGTCCTCACCCCAAGCGCCCGGTTGCCAGGCGAAGAAAACGGCGA
ACCAATCGTTTTAAGTGACGGATTGTCTACCGGAGTACTTTCGGTATGTCCGAACAAGAAGGGATACTGTGTCACCAGAC
CAAGAAAAAATTAAATCATCTTAGATGTTACAAAATCAAGGAGTGAATGGAAGCATGCAACCAATGAGTATTTAGATGAC
TCCTTGAGTTCTAATCAAACATTTAATTTATCTCTTTATTTAAGTCTTGAATGCATAAAGACTACAAATAAAAATAACTT
ATTTGGAAAAACTAAAATGTGAAATAGGTGTAACCTTTGGGGATGGAGGGAGTACCATTTAACCTGCTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50479.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis