Browse Element(s) Details


Os.56750.1.S1_at

Description gb:AK110374.1
DB_XREF= gi:32995583
TID=Os.56750.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.56750 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-165-C03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-165-C03, full insert sequence.
FL= gb:AK110374.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g385605/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g38480Os.50479.1.S1_at11/118+24218884..24222997F-box domain containing protein, expressed
LOC_Os08g38490OsAffx.6069.1.S1_x_at11/118+24224758..24225912F-box domain containing protein
LOC_Os08g38490OsAffx.6069.1.S1_at11/118+24224758..24225912F-box domain containing protein
LOC_Os08g38500NANA8+24226865..24227287transposon protein, putative, unclassified
LOC_Os08g38510OsAffx.29590.1.S1_at11/118+24231512..24231967hypothetical protein
LOC_Os08g38520OsAffx.29591.1.S1_at11/118+24233129..24233974F-box domain containing protein
LOC_Os08g38520OsAffx.29591.1.S1_x_at11/118+24233129..24233974F-box domain containing protein
LOC_Os08g38530Os.15237.1.S1_at3/118+24234688..24236129hypothetical protein
LOC_Os08g38540OsAffx.17405.1.S1_at10/118+24237384..24239114hypothetical protein
LOC_Os08g38550OsAffx.6070.1.S1_at9/118+24239968..24243475hypothetical protein
LOC_Os08g38560Os.7659.1.S1_s_at5/118+24246249..24249917Leucine Rich Repeat family protein, expressed
LOC_Os08g38560Os.56750.1.S1_at5/118+24246249..24249917Leucine Rich Repeat family protein, expressed
LOC_Os08g38560OsAffx.30096.1.S1_x_at1/118+24246249..24249917Leucine Rich Repeat family protein, expressed
LOC_Os08g38560Os.56726.1.S1_x_at1/118+24246249..24249917Leucine Rich Repeat family protein, expressed
LOC_Os08g38570Os.19179.1.S1_at11/118+24251527..24256259transducin family protein, putative, expressed
LOC_Os08g38580Os.57036.1.S1_at11/118+24256547..24257619Harpin-induced protein 1 containing protein, expressed
LOC_Os08g38590OsAffx.6071.1.S1_at11/118+24258787..24261024SRF-type transcription factor family protein, expressed
LOC_Os08g38600Os.10254.1.S1_at11/118+24265096..24268481Copine family protein, expressed
LOC_Os08g38610OsAffx.6072.1.S1_at10/118+24269343..24273295pentatricopeptide, putative
LOC_Os08g38620Os.14799.1.S1_at11/118+24274864..24279963expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56750.1.S1_at--849--9231Chr08:24249096..24249120 (25 bp)
TCCGGCTCCGCCAAGGTTGACTCGT
LOC_Os08g38560
Os.56750.1.S1_at--549--2911Chr08:24249108..24249132 (25 bp)
AAGGTTGACTCGTCCAAGCCTCGCA
LOC_Os08g38560
Os.56750.1.S1_at--704--9951Chr08:24249435..24249459 (25 bp)
TACGCGTCAATGCAAAGGATTAGTG
LOC_Os08g38560
Os.56750.1.S1_at--251--2311Chr08:24249448..24249472 (25 bp)
AAAGGATTAGTGAGAAGAGCGACGT
LOC_Os08g38560
Os.56750.1.S1_at--907--4651Chr08:24249484..24249508 (25 bp)
GCGTGGTTGTGCTGGAGATCCTGAC
LOC_Os08g38560
Os.56750.1.S1_at--565--2311NONE
AAAGCCGGAAGCGCCAAGGGTTGCA
NONE
Os.56750.1.S1_at--862--1291NONE
AGATGCTGGCAGGTGTTTCTCCCGT
NONE
Os.56750.1.S1_at--704--4711NONE
GCTGGCAGGTGTTTCTCCCGTTCGC
NONE
Os.56750.1.S1_at--477--3991NONE
CGAGGAAGCACCGCTGCCGAAAGGC
NONE
Os.56750.1.S1_at--467--4511NONE
GCCGAAAGGCGGCTCTTCTAAGCTG
NONE
Os.56750.1.S1_at--35--4111NONE
CGAAAGGCGGCTCTTCTAAGCTGCT
NONE
Target Sequence 
TCCGGCTCCGCCAAGGTTGACTCGTCCAAGCCTCGCATCGCCGGCTCCTACGGCTATATCGCACCAGNNTACGCGTCAAT
GCAAAGGATTAGTGAGAAGAGCGACGTGTACAGCTTCGGCGTGGTTGTGCTGGAGATCCTGACGGGGAGACACCCGCTGG
ACCCGANGCTGCCAGGTGGGACCCACCTGGTGCAGTGGGTGCGGGACCACCTGCAGGCGAACGGGGCCGTGGCGGAGCTC
CTTCGACCCGCGGCTGCGCGGGGAAAGCCGGAAGCGCCAAGGGTTGCAGGGAGATGCTGGCAGGTGTTTCTCCCGTTCGC
CCGTGCTCTGCAATCGCGCAACCGNCCGAACGACCGGCCGGCGATGAAGGAACGTGGTGGCGCTTGCTGAAAGCGAANGG
NTCGCCGGCGAGGAAGCACCGCTGCCGAAAGGCGGCTCTTCTAAGCTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56750.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis