Browse Element(s) Details


Os.19179.1.S1_at

Description gb:AK111820.1
DB_XREF= gi:37988483
TID=Os.19179.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.19179 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033033D24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023011O16, full insert sequence.
FL= gb:AK101284.1 gb:AK111820.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3857011/11transducin family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g38500NANA8+24226865..24227287transposon protein, putative, unclassified
LOC_Os08g38510OsAffx.29590.1.S1_at11/118+24231512..24231967hypothetical protein
LOC_Os08g38520OsAffx.29591.1.S1_at11/118+24233129..24233974F-box domain containing protein
LOC_Os08g38520OsAffx.29591.1.S1_x_at11/118+24233129..24233974F-box domain containing protein
LOC_Os08g38530Os.15237.1.S1_at3/118+24234688..24236129hypothetical protein
LOC_Os08g38540OsAffx.17405.1.S1_at10/118+24237384..24239114hypothetical protein
LOC_Os08g38550OsAffx.6070.1.S1_at9/118+24239968..24243475hypothetical protein
LOC_Os08g38560Os.7659.1.S1_s_at5/118+24246249..24249917Leucine Rich Repeat family protein, expressed
LOC_Os08g38560Os.56750.1.S1_at5/118+24246249..24249917Leucine Rich Repeat family protein, expressed
LOC_Os08g38560OsAffx.30096.1.S1_x_at1/118+24246249..24249917Leucine Rich Repeat family protein, expressed
LOC_Os08g38560Os.56726.1.S1_x_at1/118+24246249..24249917Leucine Rich Repeat family protein, expressed
LOC_Os08g38570Os.19179.1.S1_at11/118+24251527..24256259transducin family protein, putative, expressed
LOC_Os08g38580Os.57036.1.S1_at11/118+24256547..24257619Harpin-induced protein 1 containing protein, expressed
LOC_Os08g38590OsAffx.6071.1.S1_at11/118+24258787..24261024SRF-type transcription factor family protein, expressed
LOC_Os08g38600Os.10254.1.S1_at11/118+24265096..24268481Copine family protein, expressed
LOC_Os08g38610OsAffx.6072.1.S1_at10/118+24269343..24273295pentatricopeptide, putative
LOC_Os08g38620Os.14799.1.S1_at11/118+24274864..24279963expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19179.1.S1_at--935--9611Chr08:24255674..24255698 (25 bp)
TCATCCGATGAGAAATCAGCGCTAC
LOC_Os08g38570
Os.19179.1.S1_at--35--9671Chr08:24255689..24255713 (25 bp)
TCAGCGCTACAGTTAGCTTCTTGTG
LOC_Os08g38570
Os.19179.1.S1_at--717--6131Chr08:24255740..24255764 (25 bp)
GAGGTCCGTGACATTTGAGAAAGTT
LOC_Os08g38570
Os.19179.1.S1_at--359--10191Chr08:24255764..24255788 (25 bp)
TATATGATGGTGTAGAGCTTGGCTC
LOC_Os08g38570
Os.19179.1.S1_at--1125--8311Chr08:24255784..24255808 (25 bp)
GGCTCATGAGCTGCATCTAGTTCTT
LOC_Os08g38570
Os.19179.1.S1_at--822--10091Chr08:24255817..24255841 (25 bp)
TAGGCTTAGACATCTGGATCTCATT
LOC_Os08g38570
Os.19179.1.S1_at--128--7971Chr08:24255832..24255856 (25 bp)
GGATCTCATTGCCAAACTTTTATAT
LOC_Os08g38570
Os.19179.1.S1_at--1062--10811Chr08:24255872..24255896 (25 bp)
TTGTCTTGCCAGTATCTTCATAGAT
LOC_Os08g38570
Os.19179.1.S1_at--178--291Chr08:24255891..24255915 (25 bp)
ATAGATGTGTTGTACTCCTGTCCCA
LOC_Os08g38570
Os.19179.1.S1_at--1052--10171Chr08:24255920..24255944 (25 bp)
TATAAGCCCTTCTAGAGTTTTTTCT
LOC_Os08g38570
Os.19179.1.S1_at--487--6331Chr08:24256217..24256241 (25 bp)
GATGCAGTTTATTTGCCTTCAACTA
LOC_Os08g38570
Target Sequence 
TCATCCGATGAGAAATCAGCGCTACAGTTAGCTTCTTGTGGAGCTGATCATTGTGTAAGGGTGTTTGAGGTCCGTGACAT
TTGAGAAAGTTATATGATGGTGTAGAGCTTGGCTCATGAGCTGCATCTAGTTCTTGCAGAACATAGGCTTAGACATCTGG
ATCTCATTGCCAAACTTTTATATGTGATTTGGCAGTGTTTGTCTTGCCAGTATCTTCATAGATGTGTTGTACTCCTGTCC
CAAAAGTATAAGCCCTTCTAGAGTTTTTTCTTATGGAGATTATGGAGAGAGTTGAAATTAANCAAGGGATGGTTGAGATT
GAATGAGATGAGGAAGTAGNCGAAGAAACTGAATGAGAGAAGTAGTTATATTTCGGGGCAAAATTTGAACGCTCGAAATA
GCTACATGTGGGGGACAAAATGTAAACTAGTGTTTTTTTACGAAAATATTGCCATTGTNATAGTTGCCAACAGAAAAANT
GCTATATAATGGCAATATTTTCATAGTCTACTTAAAGACATGTAGCANTGGTTGACTGATAAACGATGCAGTTTATTTGC
CTTCAACTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19179.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis