Browse Element(s) Details


Os.55554.1.S1_at

Description gb:AK108305.1
DB_XREF= gi:32993514
TID=Os.55554.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55554 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-141-F05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-141-F05, full insert sequence.
FL= gb:AK108305.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3827011/11Fasciclin-like arabinogalactan protein 1 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g38210Os.5093.1.S1_at11/118+24089567..24095822Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os08g38220Os.10747.1.S1_s_at11/118+24099848..24101100Dof domain, zinc finger family protein, expressed
LOC_Os08g38230NANA8+24103317..24103630hypothetical protein
LOC_Os08g38240Os.24174.1.A1_at11/118+24105445..24109269transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g38250OsAffx.6065.1.S1_x_at11/118+24112203..24112802expressed protein
LOC_Os08g38260OsAffx.17395.1.S1_at11/118+24117056..24118347hypothetical protein
LOC_Os08g38270Os.55554.1.S1_at11/118+24119910..24121014Fasciclin-like arabinogalactan protein 1 precursor, putative, expressed
LOC_Os08g38270OsAffx.6066.1.S1_s_at11/118+24119910..24121014Fasciclin-like arabinogalactan protein 1 precursor, putative, expressed
LOC_Os08g38280Os.52746.1.S1_at11/118+24122115..24123689expressed protein
LOC_Os08g38289NANA8+24125232..24126109hypothetical protein
LOC_Os08g38300OsAffx.29587.1.S1_s_at11/118+24128481..24129312Histone H2B, putative, expressed
LOC_Os08g38300OsAffx.10929.1.S1_x_at2/118+24128481..24129312Histone H2B, putative, expressed
LOC_Os08g38310Os.53633.1.S1_x_at11/118+24130321..24137033expressed protein
LOC_Os08g38310OsAffx.17396.1.S1_at10/118+24130321..24137033expressed protein
LOC_Os08g38310OsAffx.17396.1.S1_x_at9/118+24130321..24137033expressed protein
LOC_Os08g38320Os.8660.1.S1_at11/118+24141188..24144560Protein kinase G11A, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55554.1.S1_at--521--10451Chr08:24120746..24120770 (25 bp)
TTAGCGGCGCTCACATTTCGAGGTG
LOC_Os08g38270
Os.55554.1.S1_at--863--8391Chr08:24120751..24120775 (25 bp)
GGCGCTCACATTTCGAGGTGGATCT
LOC_Os08g38270
Os.55554.1.S1_at--83--3591Chr08:24120759..24120783 (25 bp)
CATTTCGAGGTGGATCTGCAGGAGA
LOC_Os08g38270
Os.55554.1.S1_at--104--7491Chr08:24120810..24120834 (25 bp)
GTGGGCGGTGTCAGTGCGTGTTCTA
LOC_Os08g38270
Os.55554.1.S1_at--1127--3451Chr08:24120821..24120845 (25 bp)
CAGTGCGTGTTCTAGTGGCGTGTGC
LOC_Os08g38270
Os.55554.1.S1_at--910--3991Chr08:24120839..24120863 (25 bp)
CGTGTGCGTGTGAGACTTGTGTTTT
LOC_Os08g38270
Os.55554.1.S1_at--699--7991Chr08:24120872..24120896 (25 bp)
GGATGGAAACTGCATAAAAATTTGT
LOC_Os08g38270
Os.55554.1.S1_at--32--9551Chr08:24120907..24120931 (25 bp)
TCTTTGTTCTTTCTTACTGCTCCAT
LOC_Os08g38270
Os.55554.1.S1_at--834--9551Chr08:24120914..24120938 (25 bp)
TCTTTCTTACTGCTCCATTGATGTT
LOC_Os08g38270
Os.55554.1.S1_at--113--9251Chr08:24120927..24120951 (25 bp)
TCCATTGATGTTGTTAGCATGAAAA
LOC_Os08g38270
Os.55554.1.S1_at--798--31Chr08:24120965..24120989 (25 bp)
ATTGATGTGGCATGGATATTCGAAC
LOC_Os08g38270
Target Sequence 
TTAGCGGCGCTCACATTTCGAGGTGGATCTGCAGGAGAGGGTGGCGGCGGCGCGCGGAGTGTCGGTGGGCGGTGTCAGTG
CGTGTTCTAGTGGCGTGTGCGTGTGAGACTTGTGTTTTTTTTTCTTGGATGGAAACTGCATAAAAATTTGTTTGTTTTTC
TTCTTTGTTCTTTCTTACTGCTCCATTGATGTTGTTAGCATGAAAAAGAAAAATCAAATATTGATGTGGCATGGATATTC
GAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55554.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis