Browse Element(s) Details


OsAffx.6065.1.S1_x_at

Description tigr:9636.m03852
TID=OsAffx.6065.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3825011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g38210Os.5093.1.S1_at11/118+24089567..24095822Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os08g38220Os.10747.1.S1_s_at11/118+24099848..24101100Dof domain, zinc finger family protein, expressed
LOC_Os08g38230NANA8+24103317..24103630hypothetical protein
LOC_Os08g38240Os.24174.1.A1_at11/118+24105445..24109269transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g38250OsAffx.6065.1.S1_x_at11/118+24112203..24112802expressed protein
LOC_Os08g38260OsAffx.17395.1.S1_at11/118+24117056..24118347hypothetical protein
LOC_Os08g38270Os.55554.1.S1_at11/118+24119910..24121014Fasciclin-like arabinogalactan protein 1 precursor, putative, expressed
LOC_Os08g38270OsAffx.6066.1.S1_s_at11/118+24119910..24121014Fasciclin-like arabinogalactan protein 1 precursor, putative, expressed
LOC_Os08g38280Os.52746.1.S1_at11/118+24122115..24123689expressed protein
LOC_Os08g38289NANA8+24125232..24126109hypothetical protein
LOC_Os08g38300OsAffx.29587.1.S1_s_at11/118+24128481..24129312Histone H2B, putative, expressed
LOC_Os08g38300OsAffx.10929.1.S1_x_at2/118+24128481..24129312Histone H2B, putative, expressed
LOC_Os08g38310Os.53633.1.S1_x_at11/118+24130321..24137033expressed protein
LOC_Os08g38310OsAffx.17396.1.S1_at10/118+24130321..24137033expressed protein
LOC_Os08g38310OsAffx.17396.1.S1_x_at9/118+24130321..24137033expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005886cellular_componentplasma membrane
GO:0031012cellular_componentextracellular matrix
GO:0031225cellular_componentanchored to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6065.1.S1_x_at--1124--3931Chr08:24112328..24112352 (25 bp)
CGGCTCACATACCTCGCCGTCGAAG
LOC_Os08g38250
OsAffx.6065.1.S1_x_at--838--7191Chr08:24112346..24112370 (25 bp)
GTCGAAGGCTCCCAGTCCCAGCAAG
LOC_Os08g38250
OsAffx.6065.1.S1_x_at--275--1151Chr08:24112359..24112383 (25 bp)
AGTCCCAGCAAGTCTCCCGAGAAGT
LOC_Os08g38250
OsAffx.6065.1.S1_x_at--209--1491Chr08:24112365..24112389 (25 bp)
AGCAAGTCTCCCGAGAAGTCCGGCA
LOC_Os08g38250
OsAffx.6065.1.S1_x_at--1032--1451Chr08:24112378..24112402 (25 bp)
AGAAGTCCGGCAAGGCTCCCGCGGC
LOC_Os08g38250
OsAffx.6065.1.S1_x_at--872--3791Chr08:24112436..24112460 (25 bp)
CTCCGGGAAGTCAGAGGCGCCCAGC
LOC_Os08g38250
OsAffx.6065.1.S1_x_at--924--6051Chr08:24112509..24112533 (25 bp)
GAGTCCGGGAAGTCCCCGGCAAGCG
LOC_Os08g38250
OsAffx.6065.1.S1_x_at--703--831Chr08:24112621..24112645 (25 bp)
AGGCCCCGACCGCAGAGGAAGCATC
LOC_Os08g38250
OsAffx.6065.1.S1_x_at--20--5031Chr08:24112632..24112656 (25 bp)
GCAGAGGAAGCATCCGGCCCCGCGG
LOC_Os08g38250
OsAffx.6065.1.S1_x_at--967--4251Chr08:24112674..24112698 (25 bp)
CCGGAAGCAGACTCGCCGGCAGCAG
LOC_Os08g38250
OsAffx.6065.1.S1_x_at--795--3971Chr08:24112738..24112762 (25 bp)
CGGGCATGAGCTCCGGCGTCACGGC
LOC_Os08g38250
Target Sequence 
CGGCTCACATACCTCGCCGTCGAAGGCTCCCAGTCCCAGCAAGTCTCCCGAGAAGTCCGGCAAGGCTCCCGCGGCGGCGC
CGCCCAAGGCCGCCGCCGCCAAGGCCCCCTCCGGGAAGTCAGAGGCGCCCAGCGAGGCGCCCGACGCCGAGTCCGGCGCG
GAGTCGCCGGAGGCCGGCGAGGAGTCCGGGAAGTCCCCGGCAAGCGCCCCCAAGGACTCCTCGTCGAGCTCTTCCGAGGA
GGAGGAGGCGTCGTCGCCGGACAGCGGCGACATGGAGGACGAGACGGCCGCCGAGGCCCCGACCGCAGAGGAAGCATCCG
GCCCCGCGGCGGACGGCCCGCCGGAGCCGGAAGCAGACTCGCCGGCAGCAGACTCGCCTGGCCCCGGCACAGCCGACGAG
GCGGGCAGCGCGGGCATGAGCTCCGGCGTCACGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6065.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis