Browse Element(s) Details


Os.5093.1.S1_at

Description gb:AK100183.1
DB_XREF= gi:32985392
TID=Os.5093.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.5093 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023030J22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023030J22, full insert sequence.
FL= gb:AK100183.1 gb:AK070237.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3821011/11Helix-loop-helix DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g38190Os.43203.1.S1_x_at9/118+24064852..24068994expressed protein
LOC_Os08g38200Os.53466.1.S1_at10/118+24071599..24077657phosphatidylinositol 3- and 4-kinase family protein, putative, expressed
LOC_Os08g38210Os.5093.1.S1_at11/118+24089567..24095822Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os08g38220Os.10747.1.S1_s_at11/118+24099848..24101100Dof domain, zinc finger family protein, expressed
LOC_Os08g38230NANA8+24103317..24103630hypothetical protein
LOC_Os08g38240Os.24174.1.A1_at11/118+24105445..24109269transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g38250OsAffx.6065.1.S1_x_at11/118+24112203..24112802expressed protein
LOC_Os08g38260OsAffx.17395.1.S1_at11/118+24117056..24118347hypothetical protein
LOC_Os08g38270Os.55554.1.S1_at11/118+24119910..24121014Fasciclin-like arabinogalactan protein 1 precursor, putative, expressed
LOC_Os08g38270OsAffx.6066.1.S1_s_at11/118+24119910..24121014Fasciclin-like arabinogalactan protein 1 precursor, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009742biological_processbrassinosteroid mediated signaling
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5093.1.S1_at--74--7871Chr08:24095066..24095090 (25 bp)
GGTATAGATTTGTCCCAAGCCAGCA
LOC_Os08g38210
Os.5093.1.S1_at--429--2651Chr08:24095082..24095106 (25 bp)
AAGCCAGCATCTCCGTGCAAATAAA
LOC_Os08g38210
Os.5093.1.S1_at--413--5911Chr08:24095396..24095420 (25 bp)
GAGCTCACTGATCCGGCATCTAATA
LOC_Os08g38210
Os.5093.1.S1_at--1126--1471Chr08:24095425..24095449 (25 bp)
AGCAATGGGCCGTCAGCTTAGGTTG
LOC_Os08g38210
Os.5093.1.S1_at--53--2491Chr08:24095501..24095525 (25 bp)
AACAGCTGATGGTTTGCTCCTGAAA
LOC_Os08g38210
Os.5093.1.S1_at--512--2631Chr08:24095539..24095563 (25 bp)
AACCATTTTTTGCTCCTAACTGTGT
LOC_Os08g38210
Os.5093.1.S1_at--946--7631Chr08:24095567..24095591 (25 bp)
GGGAGCCCCAAGGTTTTATGTATAT
LOC_Os08g38210
Os.5093.1.S1_at--1063--2811Chr08:24095593..24095617 (25 bp)
AAGTTTACCTGTGACGTCTCGACAA
LOC_Os08g38210
Os.5093.1.S1_at--247--2231Chr08:24095619..24095643 (25 bp)
ACAAGGCCTTGATGTATTCTTTCAT
LOC_Os08g38210
Os.5093.1.S1_at--574--9591Chr08:24095640..24095664 (25 bp)
TCATTTAATCACTTCGCCGTTCTAG
LOC_Os08g38210
Os.5093.1.S1_at--692--7351Chr08:24095700..24095724 (25 bp)
GTGAAGCTGCTTTTGTCCATATGCT
LOC_Os08g38210
Target Sequence 
GGTATAGATTTGTCCCAAGCCAGCATCTCCGTGCAAATAAATCTTGGCAAGAGGGCTATGAAGAGATCTACTCCTGCTGC
AACCTCCACTTCTAAGGAGCTCACTGATCCGGCATCTAATAGTCAAGCAATGGGCCGTCAGCTTAGGTTGGGTGATGGCG
CTGAAGAACATCGACAAGCCTCAAAGCGACACAAATCAGATAACAGCTGATGGTTTGCTCCTGAAAACCCCAGATATTCA
ACCATTTTTTGCTCCTAACTGTGTACGGGGAGCCCCAAGGTTTTATGTATATTAAGTTTACCTGTGACGTCTCGACAAAA
CAAGGCCTTGATGTATTCTTTCATTTAATCACTTCGCCGTTCTAGCCCCTAGGGAAGAAAGGAAGCTTCCATTGCAGATT
GTGAAGCTGCTTTTGTCCATATGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5093.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis