Browse Element(s) Details


Os.52746.1.S1_at

Description gb:AK069034.1
DB_XREF= gi:32979058
TID=Os.52746.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52746 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023050E02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023004E14, full insert sequence.
FL= gb:AK069034.1 gb:AK070422.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3828011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g38220Os.10747.1.S1_s_at11/118+24099848..24101100Dof domain, zinc finger family protein, expressed
LOC_Os08g38230NANA8+24103317..24103630hypothetical protein
LOC_Os08g38240Os.24174.1.A1_at11/118+24105445..24109269transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g38250OsAffx.6065.1.S1_x_at11/118+24112203..24112802expressed protein
LOC_Os08g38260OsAffx.17395.1.S1_at11/118+24117056..24118347hypothetical protein
LOC_Os08g38270Os.55554.1.S1_at11/118+24119910..24121014Fasciclin-like arabinogalactan protein 1 precursor, putative, expressed
LOC_Os08g38270OsAffx.6066.1.S1_s_at11/118+24119910..24121014Fasciclin-like arabinogalactan protein 1 precursor, putative, expressed
LOC_Os08g38280Os.52746.1.S1_at11/118+24122115..24123689expressed protein
LOC_Os08g38289NANA8+24125232..24126109hypothetical protein
LOC_Os08g38300OsAffx.29587.1.S1_s_at11/118+24128481..24129312Histone H2B, putative, expressed
LOC_Os08g38300OsAffx.10929.1.S1_x_at2/118+24128481..24129312Histone H2B, putative, expressed
LOC_Os08g38310Os.53633.1.S1_x_at11/118+24130321..24137033expressed protein
LOC_Os08g38310OsAffx.17396.1.S1_at10/118+24130321..24137033expressed protein
LOC_Os08g38310OsAffx.17396.1.S1_x_at9/118+24130321..24137033expressed protein
LOC_Os08g38320Os.8660.1.S1_at11/118+24141188..24144560Protein kinase G11A, putative, expressed
LOC_Os08g38330OsAffx.32149.5.S1_at11/118+24146225..24147826F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52746.1.S1_at--408--2931Chr08:24123098..24123122 (25 bp)
AAGGAATCCACGGTATCCGGCAAGA
LOC_Os08g38280
Os.52746.1.S1_at--422--2431Chr08:24123142..24123166 (25 bp)
AAAAGAATCTACAGCGCCCGGCAAG
LOC_Os08g38280
Os.52746.1.S1_at--142--1951Chr08:24123176..24123200 (25 bp)
ACGGCCGCGGTCAAGGAATCTACAG
LOC_Os08g38280
Os.52746.1.S1_at--869--651Chr08:24123213..24123237 (25 bp)
ATGCACCCGCCATGGCTGAGAAATC
LOC_Os08g38280
Os.52746.1.S1_at--436--8011Chr08:24123323..24123347 (25 bp)
GGAGGCTACCAATACGTCAATTTCG
LOC_Os08g38280
Os.52746.1.S1_at--1--2451Chr08:24123376..24123400 (25 bp)
AAAATCGAGTGACCGTGCCGATGGC
LOC_Os08g38280
Os.52746.1.S1_at--949--4411Chr08:24123426..24123450 (25 bp)
GCCAGATGATGCACTAACAACCCTA
LOC_Os08g38280
Os.52746.1.S1_at--809--231Chr08:24123513..24123537 (25 bp)
ATATTTGAGTTTTGTGGCGCCCAAC
LOC_Os08g38280
Os.52746.1.S1_at--145--7611Chr08:24123541..24123565 (25 bp)
GGGCAAATCAAGTGCTCGTTTCATA
LOC_Os08g38280
Os.52746.1.S1_at--386--1191Chr08:24123631..24123655 (25 bp)
AGTATTCTTTAACACCTACCCATAT
LOC_Os08g38280
Os.52746.1.S1_at--603--2471Chr08:24123641..24123665 (25 bp)
AACACCTACCCATATGATTTGCTCA
LOC_Os08g38280
Target Sequence 
AAGGAATCCACGGTATCCGGCAAGACCGACACAGAAACCGCGGCAAAAGAATCTACAGCGCCCGGCAAGACCGACACGAC
GGCCGCGGTCAAGGAATCTACAGCCGGCAAAGGCGATGCACCCGCCATGGCTGAGAAATCCGCGGCAGGTAAGGCCGAGG
CATCCGCCGCGGCAAAGGAATCCCCAACAAACAAGGCCGACGCAGCGGCGGCCGGCCCTACCAGTGGAGGCTACCAATAC
GTCAATTTCGTCATAAAGAATCCAGTCAAAGCCAAGGAAAAATCGAGTGACCGTGCCGATGGCCTTCCTATCGATCCGAC
GCCCGACGGCCAGATGATGCACTAACAACCCTAAATCCCCAATGTACGATTGATTTGATGTGTACTGCGTTTGTATTTGA
TTTTGTACATTTGCCATATTTGAGTTTTGTGGCGCCCAACTTGGGGCAAATCAAGTGCTCGTTTCATACAGTTTTCGAAG
CAAACCAACAGAAGGGGTTGTAAANGAATATAAAGAGGGTTGTGCTTGGAGAAAGTATTCTTTAACACCTACCCATATGA
TTTGCTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52746.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis