Browse Element(s) Details


OsAffx.11391.1.S1_at

Description tigr:9629.m03763
TID=OsAffx.11391.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3951011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g39490OsAffx.11390.3.S1_s_at11/111+22582020..22584606hypothetical protein
LOC_Os01g39500NANA1+22590974..22591198retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g39510OsAffx.11391.1.S1_at11/111+22596895..22597394hypothetical protein
LOC_Os01g39520OsAffx.11392.2.S1_x_at11/111+22598694..22600324hypothetical protein
LOC_Os01g39530NANA1+22600475..22602543retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g39540OsAffx.25476.1.S1_at7/111+22604724..22606158hypothetical protein
LOC_Os01g39540OsAffx.8356.1.S1_x_at1/111+22604724..22606158hypothetical protein
LOC_Os01g39540Os.50889.1.S1_at1/111+22604724..22606158hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11391.1.S1_at--464--8651Chr01:22597182..22597206 (25 bp)
TGGGCGTGGCCCATGACTGTGCTCA
LOC_Os01g39510
OsAffx.11391.1.S1_at--365--7551Chr01:22597187..22597211 (25 bp)
GTGGCCCATGACTGTGCTCATCGGA
LOC_Os01g39510
OsAffx.11391.1.S1_at--692--5731Chr01:22597196..22597220 (25 bp)
GACTGTGCTCATCGGAGGTCTGCAA
LOC_Os01g39510
OsAffx.11391.1.S1_at--121--9611Chr01:22597204..22597228 (25 bp)
TCATCGGAGGTCTGCAAGTCATCTG
LOC_Os01g39510
OsAffx.11391.1.S1_at--744--1031Chr01:22597211..22597235 (25 bp)
AGGTCTGCAAGTCATCTGGCTCATC
LOC_Os01g39510
OsAffx.11391.1.S1_at--139--9591Chr01:22597256..22597280 (25 bp)
TCTTGGCGTCCGTCCGTTGGAAGTA
LOC_Os01g39510
OsAffx.11391.1.S1_at--1139--3451Chr01:22597292..22597316 (25 bp)
CAGTGTCGACGATGAGCGTGCCGAT
LOC_Os01g39510
OsAffx.11391.1.S1_at--129--5991Chr01:22597321..22597345 (25 bp)
GAGACCATGGAGACTATGGAGACCA
LOC_Os01g39510
OsAffx.11391.1.S1_at--512--5991Chr01:22597330..22597354 (25 bp)
GAGACTATGGAGACCATGCCGGCAA
LOC_Os01g39510
OsAffx.11391.1.S1_at--279--10111Chr01:22597335..22597359 (25 bp)
TATGGAGACCATGCCGGCAAACGGG
LOC_Os01g39510
OsAffx.11391.1.S1_at--712--631Chr01:22597340..22597364 (25 bp)
AGACCATGCCGGCAAACGGGAAGCT
LOC_Os01g39510
Target Sequence 
TGGGCGTGGCCCATGACTGTGCTCATCGGAGGTCTGCAAGTCATCTGGCTCATCGGCGATGGCCGCGGCCTTCCTCTTGG
CGTCCGTCCGTTGGAAGTACCCCGTGGCGACAGTGTCGACGATGAGCGTGCCGATGGCGGAGACCATGGAGACTATGGAG
ACCATGCCGGCAAACGGGAAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11391.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis