Browse Element(s) Details


OsAffx.11390.3.S1_s_at

Description tigr:9629.m03761
TID=OsAffx.11390.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3949011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g39464Os.14491.2.S1_x_at4/111+22555102..22560105transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g39464Os.47463.1.S1_x_at3/111+22555102..22560105transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g39480Os.57500.1.S1_x_at2/111+22563761..22564914Anthocyanin regulatory Lc protein, putative
LOC_Os01g39490OsAffx.11390.3.S1_s_at11/111+22582020..22584606hypothetical protein
LOC_Os01g39500NANA1+22590974..22591198retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g39510OsAffx.11391.1.S1_at11/111+22596895..22597394hypothetical protein
LOC_Os01g39520OsAffx.11392.2.S1_x_at11/111+22598694..22600324hypothetical protein
LOC_Os01g39530NANA1+22600475..22602543retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g39540OsAffx.25476.1.S1_at7/111+22604724..22606158hypothetical protein
LOC_Os01g39540OsAffx.8356.1.S1_x_at1/111+22604724..22606158hypothetical protein
LOC_Os01g39540Os.50889.1.S1_at1/111+22604724..22606158hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11390.3.S1_s_at--192--1851Chr01:22582547..22582571 (25 bp)
ACGCAGATCACCTGCGCCGGTGGAA
LOC_Os01g39490
OsAffx.11390.3.S1_s_at--376--1891Chr01:22582518..22582542 (25 bp)
ACGTTGTCGACGCAGAGCTCAACCT
LOC_Os01g39490
OsAffx.11390.3.S1_s_at--206--4131Chr01:22582508..22582532 (25 bp)
CGCAGAGCTCAACCTCCATACTGGG
LOC_Os01g39490
OsAffx.11390.3.S1_s_at--983--8251Chr01:22582484..22582508 (25 bp)
GGCAGCAGAACTCCCACGCAGAGGA
LOC_Os01g39490
OsAffx.11390.3.S1_s_at--650--5471Chr01:22582477..22582501 (25 bp)
GAACTCCCACGCAGAGGACACATGG
LOC_Os01g39490
OsAffx.11390.3.S1_s_at--414--4651Chr01:22582430..22582454 (25 bp)
GCGTCGGAGTGGTCTTCTTCAGGAC
LOC_Os01g39490
OsAffx.11390.3.S1_s_at--244--6131Chr01:22582424..22582448 (25 bp)
GAGTGGTCTTCTTCAGGACCAACTC
LOC_Os01g39490
OsAffx.11390.3.S1_s_at--569--951Chr01:22582410..22582434 (25 bp)
AGGACCAACTCCACTTGCGCTAGCG
LOC_Os01g39490
OsAffx.11390.3.S1_s_at--170--8551Chr01:22582345..22582369 (25 bp)
TGGAGGCGGAGCGTTGTTTATCCCC
LOC_Os01g39490
OsAffx.11390.3.S1_s_at--28--6831Chr01:22582330..22582354 (25 bp)
GTTTATCCCCTGCACTTGCTCCAAA
LOC_Os01g39490
OsAffx.11390.3.S1_s_at--94--3951Chr01:22582231..22582255 (25 bp)
CGGCTCGGCATTTGGCCAAGCAGGT
LOC_Os01g39490
Target Sequence 
ACGCAGATCACCTGCGCCGGTGGAAGCCGACGTTGTCGACGCAGAGCTCAACCTCCATACTGGGGCAGCAGAACTCCCAC
GCAGAGGACACATGGGAGAGGAATGGCGAGGAGGGCGGCGTCGGAGTGGTCTTCTTCAGGACCAACTCCACTTGCGCTAG
CGCCGGCCGAGGCGACGACTAGCGGCGAGCGGTGGTCAGCTATGGAGGCGGAGCGTTGTTTATCCCCTGCACTTGCTCCA
AACAGGGGGTGCGGGGACGTGGTGGCGACGAGGATGGACGTGAGGTGGTGCGGCGACTCGATGCACCGGTCCTGCCCGGC
TCGGCATTTGGCCAAGCAGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11390.3.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis