Browse Element(s) Details


OsAffx.25476.1.S1_at

Description tigr:9629.m03766
TID=OsAffx.25476.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g395407/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g39490OsAffx.11390.3.S1_s_at11/111+22582020..22584606hypothetical protein
LOC_Os01g39500NANA1+22590974..22591198retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g39510OsAffx.11391.1.S1_at11/111+22596895..22597394hypothetical protein
LOC_Os01g39520OsAffx.11392.2.S1_x_at11/111+22598694..22600324hypothetical protein
LOC_Os01g39530NANA1+22600475..22602543retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g39540OsAffx.25476.1.S1_at7/111+22604724..22606158hypothetical protein
LOC_Os01g39540OsAffx.8356.1.S1_x_at1/111+22604724..22606158hypothetical protein
LOC_Os01g39540Os.50889.1.S1_at1/111+22604724..22606158hypothetical protein
LOC_Os01g39550OsAffx.19542.3.S1_x_at6/111+22622580..22626802retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g39560OsAffx.23580.1.S1_at11/111+22628083..22634704Anthocyanin regulatory Lc protein, putative
LOC_Os01g39560OsAffx.29724.3.S1_x_at1/111+22628083..22634704Anthocyanin regulatory Lc protein, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25476.1.S1_at--729--5431Chr01:22606267..22606291 (25 bp)
GAACCTCGGCAATGTGTCACTGCAG
NONE
OsAffx.25476.1.S1_at--353--8471Chr01:22606231..22606255 (25 bp)
TGGCCGAGCCGTACTGTTTGTCATG
NONE
OsAffx.25476.1.S1_at--221--6871Chr01:22606216..22606240 (25 bp)
GTTTGTCATGTTCTTGCTGGTGCCG
NONE
OsAffx.25476.1.S1_at--764--2671Chr01:22606115..22606139 (25 bp)
AAGCGCTGCATCTCAAGGTCATCAT
LOC_Os01g39540
OsAffx.25476.1.S1_at--887--2891Chr01:22606101..22606125 (25 bp)
AAGGTCATCATCATTTTCTGCATCC
LOC_Os01g39540
OsAffx.25476.1.S1_at--64--431Chr01:22606092..22606116 (25 bp)
ATCATTTTCTGCATCCTCACCGGGA
LOC_Os01g39540
OsAffx.25476.1.S1_at--194--6091Chr01:22606011..22606035 (25 bp)
GAGTCGGACGTGTTCATCTACGTCA
LOC_Os01g39540
OsAffx.25476.1.S1_at--790--7411Chr01:22606002..22606026 (25 bp)
GTGTTCATCTACGTCAAGACCTTCG
LOC_Os01g39540
OsAffx.25476.1.S1_at--777--8431Chr01:22605930..22605954 (25 bp)
GGCCTTCGAGGCTCTCAGCTGTTGG
LOC_Os01g39540
OsAffx.25476.1.S1_at--163--11714Chr11:12229784..12229908 (24 bp)
AGTATAAATACTAACCCGGAGCAGG
NONE
OsAffx.25476.1.S1_at--1047--5611NONE
GACAGCTCCGGTGTTAACGGTCATA
NONE
Target Sequence 
GAACCTCGGCAATGTGTCACTGCAGCCGCCCCATCGTGGCCGAGCCGTACTGTTTGTCATGTTCTTGCTGGTGCCGCGGC
AGAGTGCGACTGCGCGACGGACACGATGGGGCGGGACAAGGTGCAAGCGCTGCATCTCAAGGTCATCATCATTTTCTGCA
TCCTCACCGGGACCGCCGTCGGGGCGGCGTTGCCTTCCCTGGGCGGCATGTTCCCGGCGATCCAGCCGGAGTCGGACGTG
TTCATCTACGTCAAGACCTTCGCCACCGGCGTCATCCTCGCCGCGGGCCCTTGTGCACATCTTGCCCACGGCCTTCGAGG
CTCTCAGCTGTTGGNNTNTCNNNNNNNNCCNNNTNNNTCTGACAAATCCGTGGGATACACAATAAACAAAGGAACTTCCT
TCTCTATCCGGAGTCCTAGTACTAGAGCACTTAGTATAAATACTAACCCGGAGCAGGGTGTACCGACAGCTCCGGTGTTA
ACGGTCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25476.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis