Browse Element(s) Details


OsAffx.23580.1.S1_at

Description tigr:9629.m03768
TID=OsAffx.23580.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to R-type basic helix-loop-helix protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3956011/11Anthocyanin regulatory Lc protein, putative
LOC_Os01g394301/11Anthocyanin regulatory Lc protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g39540OsAffx.25476.1.S1_at7/111+22604724..22606158hypothetical protein
LOC_Os01g39540OsAffx.8356.1.S1_x_at1/111+22604724..22606158hypothetical protein
LOC_Os01g39540Os.50889.1.S1_at1/111+22604724..22606158hypothetical protein
LOC_Os01g39550OsAffx.19542.3.S1_x_at6/111+22622580..22626802retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g39560OsAffx.23580.1.S1_at11/111+22628083..22634704Anthocyanin regulatory Lc protein, putative
LOC_Os01g39560OsAffx.29724.3.S1_x_at1/111+22628083..22634704Anthocyanin regulatory Lc protein, putative
LOC_Os01g39570NANA1+22643104..22648558retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g39580Os.57500.1.S1_x_at3/111+22648916..22654218Anthocyanin regulatory Lc protein, putative
LOC_Os01g39580Os.57500.1.S1_at1/111+22648916..22654218Anthocyanin regulatory Lc protein, putative
LOC_Os01g39580OsAffx.940.1.S1_x_at1/111+22648916..22654218Anthocyanin regulatory Lc protein, putative
LOC_Os01g39580Os.51127.2.S1_x_at1/111+22648916..22654218Anthocyanin regulatory Lc protein, putative
LOC_Os01g39590OsAffx.23582.1.S1_x_at11/111+22659374..22660089hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0001708biological_processcell fate specification
GO:0009813biological_processflavonoid biosynthesis
GO:0009957biological_processepidermal cell fate specification
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23580.1.S1_at--549--6411Chr01:22630781..22630805 (25 bp)
GATCTCGGCAACGTAGAATGGTACT
LOC_Os01g39560
OsAffx.23580.1.S1_at--464--7151Chr01:22633211..22633235 (25 bp)
GTCTGCCGATAGCAAAGCCTTCCCG
LOC_Os01g39560
OsAffx.23580.1.S1_at--76--4832Chr01:22633241..22633381 (25 bp)
GCTCTTAGCCAAGAACGCTTCTATT
LOC_Os01g39560
OsAffx.23580.1.S1_at--750--3171Chr01:22633514..22633538 (25 bp)
AATTGTCTGCGTTCCATTCATGACT
LOC_Os01g39560
OsAffx.23580.1.S1_at--992--10671Chr01:22633525..22633549 (25 bp)
TTCCATTCATGACTGGCGTTCTTGA
LOC_Os01g39560
OsAffx.23580.1.S1_at--919--5731Chr01:22633535..22633559 (25 bp)
GACTGGCGTTCTTGAGCTTGGGACC
LOC_Os01g39560
OsAffx.23580.1.S1_at--186--6851Chr01:22634464..22634488 (25 bp)
GTTTCCCTCGCTTCATGATAAAAAT
LOC_Os01g39560
OsAffx.23580.1.S1_at--1126--9011Chr01:22634491..22634515 (25 bp)
TGCAAACTTTGCATCTTATATGAGT
LOC_Os01g39560
OsAffx.23580.1.S1_at--555--6391Chr01:22634572..22634596 (25 bp)
GATCGACAGATTTTCAAGGCATGCC
LOC_Os01g39560
OsAffx.23580.1.S1_at--31--3091Chr01:22634639..22634663 (25 bp)
AATAGCTATCATTTGGACTTCCTTA
LOC_Os01g39560
OsAffx.23580.1.S1_at--775--10231Chr01:22634650..22634674 (25 bp)
TTTGGACTTCCTTAACTCCATCACA
LOC_Os01g39560
Target Sequence 
GATCTCGGCAACGTAGAATGGTACTACGTTGTCTGCATGACCTACGCCTTCCGCCCTGGACAATGTGTGCCAGGTAAAAG
CTTTGCAAGCAATGGATGTGCCTGGCTGTGCAACGCTCAGTCTGCCGATAGCAAAGCCTTCCCGCGCAAGCTCTTAGCCA
AGAACGCTTCTATTCAGACAATTGTCTGCGTTCCATTCATGACTGGCGTTCTTGAGCTTGGGACCACTGATCCGGCGGCG
GTGGCTAGAGGGGAGGCGGCGGCGGCGGGGAGGATGAGCCCTATCCTCCGCCAGATCTGGCGAGAAGGAAGGGATAGCGA
GGATTCAGTATACGAATTGATTAATCATGTGTTTCCCTCGCTTCATGATAAAAATAATGCAAACTTTGCATCTTATATGA
GTACACATGCCATTCTATCCACTAAAAATGATTATGTGGACAAACTAAATGCAAATATGATCGACAGATTTTCAAGGCAT
GCCAAGGTTTATCACAGCTTTGACTCTGTTGATGATGATCCTCACAATAGCTATCATTTGGACTTCCTTAACTCCATCAC
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23580.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis