Browse Element(s) Details


Os.57500.1.S1_at

Description gb:U39866.1
DB_XREF= gi:1086541
TID=Os.57500.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.57500 (NCBI UniGene Cluster)
UG_TITLE=Transcriptional activator (Rb) mRNA, partial cds
DEF=Oryza sativa transcriptional activator (Rb) mRNA, partial cds.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g395801/11Anthocyanin regulatory Lc protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g39550OsAffx.19542.3.S1_x_at6/111+22622580..22626802retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g39560OsAffx.23580.1.S1_at11/111+22628083..22634704Anthocyanin regulatory Lc protein, putative
LOC_Os01g39560OsAffx.29724.3.S1_x_at1/111+22628083..22634704Anthocyanin regulatory Lc protein, putative
LOC_Os01g39570NANA1+22643104..22648558retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g39580Os.57500.1.S1_x_at3/111+22648916..22654218Anthocyanin regulatory Lc protein, putative
LOC_Os01g39580Os.57500.1.S1_at1/111+22648916..22654218Anthocyanin regulatory Lc protein, putative
LOC_Os01g39580OsAffx.940.1.S1_x_at1/111+22648916..22654218Anthocyanin regulatory Lc protein, putative
LOC_Os01g39580Os.51127.2.S1_x_at1/111+22648916..22654218Anthocyanin regulatory Lc protein, putative
LOC_Os01g39590OsAffx.23582.1.S1_x_at11/111+22659374..22660089hypothetical protein
LOC_Os01g39600Os.45953.1.S1_at5/111+22665028..22668325Leucine Rich Repeat family protein, expressed
LOC_Os01g39620OsAffx.23583.1.S1_at11/111+22677947..22678461hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0001708biological_processcell fate specification
GO:0009957biological_processepidermal cell fate specification
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57500.1.S1_at--983--3531NONE
CATCCATCCTTGCAGAGCCGATACC
NONE
Os.57500.1.S1_at--142--5871NONE
GAGCCGATACCCTACCTCAAGGACC
NONE
Os.57500.1.S1_at--698--8191NONE
GGAAGAAGATGTCTAGCCCGCCCAA
NONE
Os.57500.1.S1_at--913--1451NONE
AGAAGATGTCTAGCCCGCCCAAGAG
NONE
Os.57500.1.S1_at--246--4551NONE
GCCCAAGAGGAACCCGTGCTCAGAG
NONE
Os.57500.1.S1_at--597--1311NONE
AGAGGAACCCGTGCTCAGAGACGAT
NONE
Os.57500.1.S1_at--328--5451NONE
GAACCCGTGCTCAGAGACGATCATC
NONE
Os.57500.1.S1_at--235--4831Chr01:22652647..22652689 (25 bp)
GCTCAGAGACGATCATCGGCGGTGC
LOC_Os01g39580
Os.57500.1.S1_at--46--7251NONE
GTCCCGGAGCTGTTAAAGGGCACCA
NONE
Os.57500.1.S1_at--31--3251NONE
CAAGCGACGTGCGTGTGATCATCAT
NONE
Os.57500.1.S1_at--291--4611NONE
GCGACGTGCGTGTGATCATCATGGA
NONE
Target Sequence 
CATCCATCCTTGCAGAGCCGATACCCTACCTCAAGGACCTGGAGAGGAGGTTCCAAGAGCTCGAGTCCGGGAAGAAGATG
TCTAGCCCGCCCAAGAGGAACCCGTGCTCAGAGACGATCATCGGCGGTGCCGCCCGCGCCGGTCCCGGAGCTGTTAAAGG
GCACCACCACTGGGTGCTCTCCGAGTCCCAGGAGGGCACCCCAAGCGACGTGCGTGTGATCATCATGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57500.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis