Browse Element(s) Details


Os.51127.2.S1_x_at

Description gb:AK061024.1
DB_XREF= gi:32971042
TID=Os.51127.2
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51127 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013132G13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-204-F02, full insert sequence.
FL= gb:AK061024.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3782011/11Cytokinin-O-glucosyltransferase 2, putative, expressed
LOC_Os01g395801/11Anthocyanin regulatory Lc protein, putative
LOC_Os07g429701/11Cytokinin-O-glucosyltransferase 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g37780OsAffx.26368.1.S1_at11/114+22239438..22244670Core histone H2A/H2B/H3/H4 family protein, expressed
LOC_Os04g37780OsAffx.17542.1.S1_at3/114+22239438..22244670Core histone H2A/H2B/H3/H4 family protein, expressed
LOC_Os04g37780Os.12813.3.S1_x_at1/114+22239438..22244670Core histone H2A/H2B/H3/H4 family protein, expressed
LOC_Os04g37780Os.22592.1.S1_a_at1/114+22239438..22244670Core histone H2A/H2B/H3/H4 family protein, expressed
LOC_Os04g37780Os.6901.1.S1_at1/114+22239438..22244670Core histone H2A/H2B/H3/H4 family protein, expressed
LOC_Os04g37790Os.27197.2.A1_at11/114+22247734..22249941expressed protein
LOC_Os04g37800OsAffx.26369.1.S1_at11/114+22252021..22252395hypothetical protein
LOC_Os04g37810Os.16596.1.S1_at10/114+22253115..22260343expressed protein
LOC_Os04g37820Os.51127.1.S1_a_at11/114+22262418..22264132Cytokinin-O-glucosyltransferase 2, putative, expressed
LOC_Os04g37820Os.51127.2.S1_x_at11/114+22262418..22264132Cytokinin-O-glucosyltransferase 2, putative, expressed
LOC_Os04g37830OsAffx.21171.5.S1_x_at1/114+22269931..22272043retrotransposon protein, putative, unclassified
LOC_Os04g37830OsAffx.1674.1.S1_at1/114+22269931..22272043retrotransposon protein, putative, unclassified
LOC_Os04g37840OsAffx.447.1.S1_at5/114+22275580..22280130retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g37840Os.52609.1.S1_at1/114+22275580..22280130retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g37840OsAffx.22947.1.S1_x_at1/114+22275580..22280130retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g37840OsAffx.22947.2.S1_x_at1/114+22275580..22280130retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0001708biological_processcell fate specification
GO:0009957biological_processepidermal cell fate specification
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51127.2.S1_x_at--1023--9091Chr04:22263613..22263637 (25 bp)
TGCTGCCGCCGGAGTTCATGGAGTC
LOC_Os04g37820
Os.51127.2.S1_x_at--929--1992Chr07:25741851..25741870 (20 bp)
ACTCGACGGTGGAGAGCCTCTGCGG
LOC_Os07g42970
Os.51127.2.S1_x_at--673--6731Chr04:22263782..22263806 (25 bp)
GTTCTTCGCGGAGCAGCAGACCAAC
LOC_Os04g37820
Os.51127.2.S1_x_at--822--2611Chr04:22263804..22263828 (25 bp)
AACCGCCGGTACAGCTGCACCGAGT
LOC_Os04g37820
Os.51127.2.S1_x_at--967--4652Chr04:22263832..22263856 (25 bp)
GCGTCGCCATGGAGATCGACGACGA
LOC_Os04g37820
Os.51127.2.S1_x_at--102--4571Chr04:22263863..22263887 (25 bp)
GCGCGACGCGGTGGAGGCCAAGATA
LOC_Os04g37820
Os.51127.2.S1_x_at--82--5771Chr04:22264014..22264038 (25 bp)
GACGTCCTCCTCTCCGGTGGCAAGG
LOC_Os04g37820
Os.51127.2.S1_x_at--1136--2931Chr04:22264035..22264059 (25 bp)
AAGGCTCGGTAGGACAACGTGCACT
LOC_Os04g37820
Os.51127.2.S1_x_at--811--6911Chr04:22264043..22264067 (25 bp)
GTAGGACAACGTGCACTAGTGCCGC
LOC_Os04g37820
Os.51127.2.S1_x_at--227--10071Chr04:22264059..22264083 (25 bp)
TAGTGCCGCCTGTTGCATGCTACTC
LOC_Os04g37820
Os.51127.2.S1_x_at--609--4172Chr04:22264087..22264111 (25 bp)
CCCTCCCATAATACAAGAGATTTTG
LOC_Os04g37820
Target Sequence 
TGCTGCCGCCGGAGTTCATGGAGTCCGTCGGGGGGCGCGGCCTGCTGGCGAGCTGGTGCCCGCAGGAGGCGGTGCTGCGG
CACGAGGCGGTGGGCGTGTTCCTGACGCACTCCGGCTGGAACTCGACGGTGGAGAGCCTCTGCGGCGGGGTGCCGATGCT
GTGCTGGCCGTTCTTCGCGGAGCAGCAGACCAACCGCCGGTACAGCTGCACCGAGTGGGGCGTCGCCATGGAGATCGACG
ACGACGTGCGGCGCGACGCGGTGGAGGCCAAGATACGGGAGGCGATGGGAGGAGACAAGGGCCGGGAGATGCGCCGCCGG
GCGGGCGAGTGGAAGGAGACCGGCCTCCGCGCGACGCGCCCCGGCGGCCGCGCGCACGCCAGCCTCGACGCGCTGGTCGC
CGACGTCCTCCTCTCCGGTGGCAAGGCTCGGTAGGACAACGTGCACTAGTGCCGCCTGTTGCATGCTACTCCCTCCCTCC
CATAATACAAGAGATTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51127.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis