Browse Element(s) Details


Os.22592.1.S1_a_at

Description gb:AY525328.1
DB_XREF= gi:42541262
TID=Os.22592.1
CNT=36
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.22592 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative histone H3 mRNA, complete cds.
PROD=putative histone H3
FL= gb:AK120807.1 gb:AY525328.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g377801/11Core histone H2A/H2B/H3/H4 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g37720Os.51133.1.S1_at11/114+22213100..22215670pentatricopeptide, putative, expressed
LOC_Os04g37730OsAffx.31683.2.S1_at11/114+22216445..22217792Zinc finger, C3HC4 type family protein, expressed
LOC_Os04g37740Os.49513.1.S1_at10/114+22222945..22224613Zinc finger, C3HC4 type family protein, expressed
LOC_Os04g37750Os.50850.1.S1_at11/114+22226251..22228352expressed protein
LOC_Os04g37760OsAffx.26367.1.S1_at11/114+22229073..22231462expressed protein
LOC_Os04g37770NANA4+22232953..22233534transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os04g37780OsAffx.26368.1.S1_at11/114+22239438..22244670Core histone H2A/H2B/H3/H4 family protein, expressed
LOC_Os04g37780OsAffx.17542.1.S1_at3/114+22239438..22244670Core histone H2A/H2B/H3/H4 family protein, expressed
LOC_Os04g37780Os.12813.3.S1_x_at1/114+22239438..22244670Core histone H2A/H2B/H3/H4 family protein, expressed
LOC_Os04g37780Os.22592.1.S1_a_at1/114+22239438..22244670Core histone H2A/H2B/H3/H4 family protein, expressed
LOC_Os04g37780Os.6901.1.S1_at1/114+22239438..22244670Core histone H2A/H2B/H3/H4 family protein, expressed
LOC_Os04g37790Os.27197.2.A1_at11/114+22247734..22249941expressed protein
LOC_Os04g37800OsAffx.26369.1.S1_at11/114+22252021..22252395hypothetical protein
LOC_Os04g37810Os.16596.1.S1_at10/114+22253115..22260343expressed protein
LOC_Os04g37820Os.51127.1.S1_a_at11/114+22262418..22264132Cytokinin-O-glucosyltransferase 2, putative, expressed
LOC_Os04g37820Os.51127.2.S1_x_at11/114+22262418..22264132Cytokinin-O-glucosyltransferase 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22592.1.S1_a_at--500--4271NONE
CCTGGAACTGTTGCTCTTCGTGAAA
NONE
Os.22592.1.S1_a_at--1016--9551Chr04:22244216..22244330 (25 bp)
TCTTCGTGAAATCCGCAAGTACCAG
LOC_Os04g37780
Os.22592.1.S1_a_at--339--8051NONE
GGAGATTGCCCAGGATTTTAAGACT
NONE
Os.22592.1.S1_a_at--963--1331Chr04:22244660..22244684 (25 bp)
AGAGGGCTTAGGCTTTCTCATCTCT
NONE
Os.22592.1.S1_a_at--257--8331Chr04:22244691..22244715 (25 bp)
GGCTCTGGTGTTTCATCTGTGACTA
NONE
Os.22592.1.S1_a_at--206--491Chr04:22244705..22244729 (25 bp)
ATCTGTGACTACTTCCTGCTTTTGC
NONE
Os.22592.1.S1_a_at--617--4891Chr04:22244722..22244746 (25 bp)
GCTTTTGCTGCTGAACTCTTATTTG
NONE
Os.22592.1.S1_a_at--567--7191Chr04:22244749..22244773 (25 bp)
GTCGTGAATGGTGCTAATACTACTC
NONE
Os.22592.1.S1_a_at--641--5331Chr04:22244797..22244821 (25 bp)
GAAGTACTCTGTTTCTGTGTTCTAG
NONE
Os.22592.1.S1_a_at--894--8811Chr04:22244854..22244878 (25 bp)
TGTTGATTTCATCCATCCATCTGAT
NONE
Os.22592.1.S1_a_at--562--3851Chr04:22244919..22244943 (25 bp)
CTGAACCTTGAATTTACCTGTGGAA
NONE
Target Sequence 
CCTGGAACTGTTGCTCTTCGTGAAATCCGCAAGTACCAGAAGAGCACTGAGCTGCTCATAAGGAAGCTTCCATTCCAGAG
GCTTGTTAGGGAGATTGCCCAGGATTTTAAGACTGATCTTCGTTTCCAGAGCCATGCGGTGCTTGCCCTTCAGGAAGCTG
CCGAGGCGTACCTGGTGGGTCTCTTCGAGGACACCAACCTGTGCGCCATCCATGCCAAGCGTGTGACCATCATGCCCAAG
GACATTCAGCTGGCTAGGAGGATCCGTGGTGAGAGGGCTTAGGCTTTCTCATCTCTGGGAGGGGCTCTGGTGTTTCATCT
GTGACTACTTCCTGCTTTTGCTGCTGAACTCTTATTTGGTGTCGTGAATGGTGCTAATACTACTCACATGTAGTAGTAGA
TTGTTAGTGAAGTACTCTGTTTCTGTGTTCTAGAACTGGATATTTTGCTAGTAAGTTGTCTCGACTGTTGATTTCATCCA
TCCATCTGATGGATGTGTATCTAGTAGTTTCTCATCTGAAGTCCTGAAATCTGAACCTTGAATTTACCTGTGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22592.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis