Browse Element(s) Details


Os.27197.2.A1_at

Description gb:AK067842.1
DB_XREF= gi:32977860
TID=Os.27197.2
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27197 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-162-G01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013123C22, full insert sequence.
FL= gb:AK067842.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3779011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g37740Os.49513.1.S1_at10/114+22222945..22224613Zinc finger, C3HC4 type family protein, expressed
LOC_Os04g37750Os.50850.1.S1_at11/114+22226251..22228352expressed protein
LOC_Os04g37760OsAffx.26367.1.S1_at11/114+22229073..22231462expressed protein
LOC_Os04g37770NANA4+22232953..22233534transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os04g37780OsAffx.26368.1.S1_at11/114+22239438..22244670Core histone H2A/H2B/H3/H4 family protein, expressed
LOC_Os04g37780OsAffx.17542.1.S1_at3/114+22239438..22244670Core histone H2A/H2B/H3/H4 family protein, expressed
LOC_Os04g37780Os.12813.3.S1_x_at1/114+22239438..22244670Core histone H2A/H2B/H3/H4 family protein, expressed
LOC_Os04g37780Os.22592.1.S1_a_at1/114+22239438..22244670Core histone H2A/H2B/H3/H4 family protein, expressed
LOC_Os04g37780Os.6901.1.S1_at1/114+22239438..22244670Core histone H2A/H2B/H3/H4 family protein, expressed
LOC_Os04g37790Os.27197.2.A1_at11/114+22247734..22249941expressed protein
LOC_Os04g37800OsAffx.26369.1.S1_at11/114+22252021..22252395hypothetical protein
LOC_Os04g37810Os.16596.1.S1_at10/114+22253115..22260343expressed protein
LOC_Os04g37820Os.51127.1.S1_a_at11/114+22262418..22264132Cytokinin-O-glucosyltransferase 2, putative, expressed
LOC_Os04g37820Os.51127.2.S1_x_at11/114+22262418..22264132Cytokinin-O-glucosyltransferase 2, putative, expressed
LOC_Os04g37830OsAffx.21171.5.S1_x_at1/114+22269931..22272043retrotransposon protein, putative, unclassified
LOC_Os04g37830OsAffx.1674.1.S1_at1/114+22269931..22272043retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27197.2.A1_at--796--4651Chr04:22248135..22248159 (25 bp)
GCGGACAAGTCCAGGACGCCGAGCA
LOC_Os04g37790
Os.27197.2.A1_at--876--4611Chr04:22248054..22248078 (25 bp)
GCGAGGATGGGCAACCTGAACCACA
LOC_Os04g37790
Os.27197.2.A1_at--465--8991Chr04:22248038..22248062 (25 bp)
TGAACCACAAGGACCGGGTGTTCGC
LOC_Os04g37790
Os.27197.2.A1_at--1062--3971Chr04:22248024..22248048 (25 bp)
CGGGTGTTCGCGTCGCTGAGCAACA
LOC_Os04g37790
Os.27197.2.A1_at--761--691Chr04:22247967..22247991 (25 bp)
ATGAGCGACTTCGACGATGAGTTCG
LOC_Os04g37790
Os.27197.2.A1_at--719--371Chr04:22247942..22247966 (25 bp)
ATCACGTCGACGAGAGCCACTACGA
LOC_Os04g37790
Os.27197.2.A1_at--469--2791Chr04:22247886..22247910 (25 bp)
AAGAGGCCGATACTTCGCAAGTTCG
LOC_Os04g37790
Os.27197.2.A1_at--859--8151Chr04:22247846..22247870 (25 bp)
GGAAAAGCTTCTACAAGGCGAATTT
LOC_Os04g37790
Os.27197.2.A1_at--636--5211Chr04:22247827..22247851 (25 bp)
GAATTTAGCGCCAGTACACACTTGA
LOC_Os04g37790
Os.27197.2.A1_at--12--2271Chr04:22247789..22247813 (25 bp)
AAATCTCTCCCATGTAATGAATGTC
LOC_Os04g37790
Os.27197.2.A1_at--41--8791Chr04:22247760..22247784 (25 bp)
TGTTTTGTTCTTCTCAATACACAAG
LOC_Os04g37790
Target Sequence 
GCGGACAAGTCCAGGACGCCGAGCAGCCGGAGGTACTCGATCGGCGAGCCCGCCAAGTTCAAGGGCGGCTTCTCGCAGTC
GGCGAGGATGGGCAACCTGAACCACAAGGACCGGGTGTTCGCGTCGCTGAGCAACATCGCCGACCTCAAGTCGGCGGCGG
AAGCCGCCATGAGCGACTTCGACGATGAGTTCGATCACGTCGACGAGAGCCACTACGACAGCATGGATCAATCCATGAAG
CAGAAGAAGAAGAGGCCGATACTTCGCAAGTTCGGGGATTTGTTCAGGAGGAAAAGCTTCTACAAGGCGAATTTAGCGCC
AGTACACACTTGAAAGGAAAAAAAAAAAATCTCTCCCATGTAATGAATGTCAATTTGTTTTGTTCTTCTCAATACACAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27197.2.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis