Browse Element(s) Details


Os.16596.1.S1_at

Description gb:AK106764.1
DB_XREF= gi:32991973
TID=Os.16596.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.16596 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-115-E09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-115-E09, full insert sequence.
FL= gb:AK106764.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3781010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g37750Os.50850.1.S1_at11/114+22226251..22228352expressed protein
LOC_Os04g37760OsAffx.26367.1.S1_at11/114+22229073..22231462expressed protein
LOC_Os04g37770NANA4+22232953..22233534transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os04g37780OsAffx.26368.1.S1_at11/114+22239438..22244670Core histone H2A/H2B/H3/H4 family protein, expressed
LOC_Os04g37780OsAffx.17542.1.S1_at3/114+22239438..22244670Core histone H2A/H2B/H3/H4 family protein, expressed
LOC_Os04g37780Os.12813.3.S1_x_at1/114+22239438..22244670Core histone H2A/H2B/H3/H4 family protein, expressed
LOC_Os04g37780Os.22592.1.S1_a_at1/114+22239438..22244670Core histone H2A/H2B/H3/H4 family protein, expressed
LOC_Os04g37780Os.6901.1.S1_at1/114+22239438..22244670Core histone H2A/H2B/H3/H4 family protein, expressed
LOC_Os04g37790Os.27197.2.A1_at11/114+22247734..22249941expressed protein
LOC_Os04g37800OsAffx.26369.1.S1_at11/114+22252021..22252395hypothetical protein
LOC_Os04g37810Os.16596.1.S1_at10/114+22253115..22260343expressed protein
LOC_Os04g37820Os.51127.1.S1_a_at11/114+22262418..22264132Cytokinin-O-glucosyltransferase 2, putative, expressed
LOC_Os04g37820Os.51127.2.S1_x_at11/114+22262418..22264132Cytokinin-O-glucosyltransferase 2, putative, expressed
LOC_Os04g37830OsAffx.21171.5.S1_x_at1/114+22269931..22272043retrotransposon protein, putative, unclassified
LOC_Os04g37830OsAffx.1674.1.S1_at1/114+22269931..22272043retrotransposon protein, putative, unclassified
LOC_Os04g37840OsAffx.447.1.S1_at5/114+22275580..22280130retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g37840Os.52609.1.S1_at1/114+22275580..22280130retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g37840OsAffx.22947.1.S1_x_at1/114+22275580..22280130retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g37840OsAffx.22947.2.S1_x_at1/114+22275580..22280130retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16596.1.S1_at--802--2751Chr04:22258523..22258547 (25 bp)
AAGAAATTGGATCCTACCCTCTCAG
LOC_Os04g37810
Os.16596.1.S1_at--451--851Chr04:22258725..22258749 (25 bp)
ATGGCACATGGAATATCCCTCCTTT
LOC_Os04g37810
Os.16596.1.S1_at--66--6031Chr04:22258755..22258779 (25 bp)
GAGATGAAGAATTTTTCCGCCTTGA
LOC_Os04g37810
Os.16596.1.S1_at--570--3311Chr04:22258816..22258840 (25 bp)
CACATGACATTTAATCCCCTGAGCA
LOC_Os04g37810
Os.16596.1.S1_at--349--10711Chr04:22259918..22260065 (25 bp)
TTGCTAGATTTATCGAACCTTCGTG
LOC_Os04g37810
Os.16596.1.S1_at--1070--5411Chr04:22260055..22260079 (25 bp)
GAACCTTCGTGTGTTACTAAAGCCA
LOC_Os04g37810
Os.16596.1.S1_at--979--4951Chr04:22260120..22260144 (25 bp)
GCATAGCTCTATCTGGGTGTAGTCC
LOC_Os04g37810
Os.16596.1.S1_at--1031--7271Chr04:22260141..22260165 (25 bp)
GTCCAATACTAATCGTTGCTCAATG
LOC_Os04g37810
Os.16596.1.S1_at--130--3131Chr04:22260174..22260198 (25 bp)
AATTTCCTGTCATTTTCACGAGATT
LOC_Os04g37810
Os.16596.1.S1_at--611--10051Chr04:22260218..22260242 (25 bp)
TAGTACTTATGTCATCGGCTTGAAT
LOC_Os04g37810
Os.16596.1.S1_at--705--5491NONE
GAAAATAATGTATCTCCCCAAAGTT
NONE
Target Sequence 
AAGAAATTGGATCCTACCCTCTCAGGAAGTTATTGGAGAAGATGCGAGGAAGCTACAAAGGAAGGTGGAAAAATGTCAGG
CCATGCATATGGCACATGGAATATCCCTCCTTTGATAAGAGATGAAGAATTTTTCCGCCTTGAAAGATCNAACNAACGCG
ACNCCTCTGCTATAACCNTCACATGACATTTAATCCCCTGAGCATGTTCATACNAAAGCGCAACAGATATTGCTAGATTT
ATCGAACCTTCGTGTGTTACTAAAGCCAGCGAGTTGGATAAGAAAAGAGGAGTCAGCGAACNTTGGTAGCATAGCTCTAT
CTGGGTGTAGTCCAATACTAATCGTTGCTCAATGCATTCTAAAATTTCCTGTCATTTTCACGAGATTTTTCTGTTGGTTT
NCCTTTTAGTACTTATGTCATCGGCTTGAATGATTAATTGCTGTGGTAACCNCACCGGAGCCTTGCCAAAAATCAAGAAA
ATAATGTATCTCCCCAAAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16596.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis