Browse Element(s) Details


Os.6901.1.S1_at

Description gb:AK102892.1
DB_XREF= gi:32988101
TID=Os.6901.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.6901 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033112N03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033112N03, full insert sequence.
FL= gb:AK102892.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g027502/11expressed protein
LOC_Os11g269701/11hypothetical protein
LOC_Os11g297301/11retrotransposon protein, putative, unclassified
LOC_Os08g398501/11lipoxygenase 8, chloroplast precursor, putative, expressed
LOC_Os04g377801/11Core histone H2A/H2B/H3/H4 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g02700Os.38226.1.S1_at11/119+1211953..1217009Polyadenylate-binding protein 2, putative, expressed
LOC_Os09g02710OsAffx.29695.1.S1_s_at11/119+1220126..1223778CBS domain containing protein, expressed
LOC_Os09g02710OsAffx.29695.1.S1_at11/119+1220126..1223778CBS domain containing protein, expressed
LOC_Os09g02710Os.11629.1.S1_at11/119+1220126..1223778CBS domain containing protein, expressed
LOC_Os09g02729Os.11389.1.S1_at11/119+1225555..1237527MAP3K-like protein kinase, putative, expressed
LOC_Os09g02729OsAffx.15516.1.S1_at1/119+1225555..1237527MAP3K-like protein kinase, putative, expressed
LOC_Os09g02750OsAffx.17542.1.S1_at10/119+1239588..1242978expressed protein
LOC_Os09g02750Os.6901.1.S1_at2/119+1239588..1242978expressed protein
LOC_Os09g02760OsAffx.19542.3.S1_x_at7/119+1247567..1251789retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os09g02770Os.51029.1.S1_at11/119+1254785..1256020expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009414biological_processresponse to water deprivation
GO:0009611biological_processresponse to wounding
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009688biological_processabscisic acid biosynthesis
GO:0009695biological_processjasmonic acid biosynthesis
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009753biological_processresponse to jasmonic acid stimulus
GO:0009816biological_processdefense response to pathogenic bacteria, incompatible interaction
GO:0030397biological_processmembrane disassembly
GO:0040007biological_processgrowth
GO:0009507cellular_componentchloroplast
GO:0003677molecular_functionDNA binding
GO:0016165molecular_functionlipoxygenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6901.1.S1_at--978--7631Chr10:11790877..11790901 (25 bp)
GGGACCCGACAGTTTCCTATATGTA
NONE
Os.6901.1.S1_at--1154--3571Chr10:11790835..11790859 (25 bp)
CATATTGGCTTCGACAGTGGGTTCA
NONE
Os.6901.1.S1_at--1032--8037Chr08:15834672..15834693 (22 bp)
GGAGTTTTCCTGAATGTTGCATGTC
NONE
Os.6901.1.S1_at--669--52713Chr11:15019664..15019687 (24 bp)
GAATGTTGCATGTCGTAATCTTGAA
LOC_Os11g26970
Os.6901.1.S1_at--751--102913Chr08:15834768..15834792 (25 bp)
TTTCCTTGTCATGTTAGGTCTTCTT
NONE
Os.6901.1.S1_at--761--9831Chr10:11790664..11790688 (25 bp)
TAAATTTTGGTTGGTTGGCTTGCTT
NONE
Os.6901.1.S1_at--680--8293Chr08:15834815..15834834 (20 bp)
GGCTTGCTTTATTTTGGACTACGTC
NONE
Os.6901.1.S1_at--38--8511Chr10:11790634..11790658 (25 bp)
TGGACTACGTCTTTTTAAGTTTGCT
NONE
Os.6901.1.S1_at--1096--10451Chr10:11790595..11790619 (25 bp)
TTAGCTGTAGCTCTTCGGAATAAAG
NONE
Os.6901.1.S1_at--844--6351Chr10:11790500..11790524 (25 bp)
GATCCAAGGACGTGTGTTGTTCCAT
NONE
Os.6901.1.S1_at--108--7471Chr10:11790489..11790513 (25 bp)
GTGTGTTGTTCCATGCCTAAACCAA
NONE
Target Sequence 
GGGACCCGACAGTTTCCTATATGTAGGTAATTTTCAGGGCAACATATTGGCTTCGACAGTGGGTTCAACTACAAAAGTAT
GAGGAAGATGGAGTTTTCCTGAATGTTGCATGTCGTAATCTTGAAACAATGGTTATGCAACTTTTCGCCAACTATGGATG
GAGATTCACCAATAGACTGGAATATTGTTTTCCTTGTCATGTTAGGTCTTCTTTAAATTTTGGTTGGTTGGCTTGCTTTA
TTTTGGACTACGTCTTTTTAAGTTTGCTACTTTTTGTAATAATTAGCTGTAGCTCTTCGGAATAAAGGCCGGGATGTTAC
ATTCCATTATTAAAAAAAATTATGGGATTAGGAACATATTGGGCATGTGTTGATGATGATCCAAGGACGTGTGTTGTTCC
ATGCCTAAACCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6901.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis