Browse Element(s) Details


Os.38226.1.S1_at

Description gb:AK067816.1
DB_XREF= gi:32977834
TID=Os.38226.1
CNT=79
FEA=FLmRNA
TIER=FL+Stack
STK=14
UG=Os.38226 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033060I24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013116F07, full insert sequence.
FL= gb:AK101706.1 gb:AK058316.1 gb:AK058314.1 gb:AK067816.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0270011/11Polyadenylate-binding protein 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g02680OsAffx.7216.1.S1_at1/119+1188403..1192805retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g02680OsAffx.17842.1.S1_at1/119+1188403..1192805retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g02690OsAffx.17541.1.S1_at11/119+1198227..1210378expressed protein
LOC_Os09g02690OsAffx.20501.1.S1_at1/119+1198227..1210378expressed protein
LOC_Os09g02690OsAffx.5983.1.S1_at1/119+1198227..1210378expressed protein
LOC_Os09g02700Os.38226.1.S1_at11/119+1211953..1217009Polyadenylate-binding protein 2, putative, expressed
LOC_Os09g02710OsAffx.29695.1.S1_s_at11/119+1220126..1223778CBS domain containing protein, expressed
LOC_Os09g02710OsAffx.29695.1.S1_at11/119+1220126..1223778CBS domain containing protein, expressed
LOC_Os09g02710Os.11629.1.S1_at11/119+1220126..1223778CBS domain containing protein, expressed
LOC_Os09g02729Os.11389.1.S1_at11/119+1225555..1237527MAP3K-like protein kinase, putative, expressed
LOC_Os09g02729OsAffx.15516.1.S1_at1/119+1225555..1237527MAP3K-like protein kinase, putative, expressed
LOC_Os09g02750OsAffx.17542.1.S1_at10/119+1239588..1242978expressed protein
LOC_Os09g02750Os.6901.1.S1_at2/119+1239588..1242978expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0000289biological_processpoly(A) tail shortening
GO:0006397biological_processmRNA processing
GO:0006413biological_processtranslational initiation
GO:0003723molecular_functionRNA binding
GO:0003743molecular_functiontranslation initiation factor activity
GO:0008143molecular_functionpoly(A) binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38226.1.S1_at--201--611Chr09:1212659..1212683 (25 bp)
ATGCCCATGAGAGATGCTGCTGCGT
LOC_Os09g02700
Os.38226.1.S1_at--691--7091Chr09:1212636..1212660 (25 bp)
GTCACAGCCTGTACCTATTGGAGCA
LOC_Os09g02700
Os.38226.1.S1_at--495--3691Chr09:1212622..1212646 (25 bp)
CTATTGGAGCATTGGCTACTGCACT
LOC_Os09g02700
Os.38226.1.S1_at--1050--1831Chr09:1212592..1212616 (25 bp)
ACGCAGCCCCTGATCAGCAAAGAAT
LOC_Os09g02700
Os.38226.1.S1_at--388--5491Chr09:1212464..1212488 (25 bp)
GAACTTGTATCCTCTTGTTGATCAG
LOC_Os09g02700
Os.38226.1.S1_at--245--8531Chr09:1212393..1212417 (25 bp)
TGGACCAGACTGAGGTGCTGCACCT
LOC_Os09g02700
Os.38226.1.S1_at--89--5431Chr09:1212331..1212355 (25 bp)
GAAGCCATGGAGGTCCTTCGCACGG
LOC_Os09g02700
Os.38226.1.S1_at--295--4611Chr09:1212286..1212310 (25 bp)
GCGACGCCTGAACAGCAGCTTGCTT
LOC_Os09g02700
Os.38226.1.S1_at--652--1551Chr09:1212270..1212294 (25 bp)
AGCTTGCTTCTCTGTCGCTGAATGA
LOC_Os09g02700
Os.38226.1.S1_at--921--6791Chr09:1212238..1212262 (25 bp)
GTTTCCTCCTAAGCATAACGACGAC
LOC_Os09g02700
Os.38226.1.S1_at--1012--10831Chr09:1212088..1212112 (25 bp)
TTGGGTATTTTGTTTGCTCGGATCT
LOC_Os09g02700
Target Sequence 
ATGCCCATGAGAGATGCTGCTGCGTCACAGCCTGTACCTATTGGAGCATTGGCTACTGCACTGGCCAACGCAGCCCCTGA
TCAGCAAAGAATGATGCTTGGTGAGAACTTGTATCCTCTTGTTGATCAGCTGGAGCATGAGCAGGCTGCGAAGGTGACTG
GCATGCTGCTGGAGATGGACCAGACTGAGGTGCTGCACCTGCTCGAGTCTCCAGAGGCTCTCAAGGCCAAGGTTGCTGAA
GCCATGGAGGTCCTTCGCACGGCCCAGCAGATCCAGACGAACGCGACGCCTGAACAGCAGCTTGCTTCTCTGTCGCTGAA
TGACGGCGTCGTTTCCTCCTAAGCATAACGACGACAGCAATTTTTGATCCATATCTCAGTTATCTTATCTATCTAGAATT
GAAAACGACTTGGTTACTTGGTTTATTGGAGTTTTAGTTTTATTGGTAGTTGAACTAGGCATTTAGGCAATGCGCGTGGA
TTGGGTATTTTGTTTGCTCGGATCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38226.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis