Browse Element(s) Details


OsAffx.5983.1.S1_at

Description tigr:9636.m02978
TID=OsAffx.5983.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2994011/11hypothetical protein
LOC_Os09g026901/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g29880OsAffx.25007.2.S1_s_at5/118+18234055..18236895retrotransposon protein, putative, unclassified
LOC_Os08g29880OsAffx.25007.1.S1_at5/118+18234055..18236895retrotransposon protein, putative, unclassified
LOC_Os08g29880OsAffx.25007.2.S1_at5/118+18234055..18236895retrotransposon protein, putative, unclassified
LOC_Os08g29890OsAffx.5982.1.S1_at9/118+18237443..18238316hypothetical protein
LOC_Os08g29900OsAffx.17232.1.S1_at11/118+18238866..18239363hypothetical protein
LOC_Os08g29910NANA8+18244101..18246661prenyltransferase, UbiA family protein
LOC_Os08g29920NANA8+18249209..18252123retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g29930Os.10703.2.S1_x_at1/118+18252439..18258549retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g29940OsAffx.5983.1.S1_at11/118+18261707..18262076hypothetical protein
LOC_Os08g29950OsAffx.17233.1.S1_at11/118+18265521..18267996hypothetical protein
LOC_Os08g29960OsAffx.17234.1.S1_at10/118+18269271..18270366hypothetical protein
LOC_Os08g29970NANA8+18272835..18274766Para-hydroxybenzoate-polyprenyltransferase, mitochondrial precursor, putative
LOC_Os08g29980Os.49832.1.S1_at11/118+18281927..18286755retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5983.1.S1_at--146--1031Chr08:18262005..18262029 (25 bp)
AGGTATGATCCTTGTGCTCGAGCTG
LOC_Os08g29940
OsAffx.5983.1.S1_at--698--571Chr08:18261961..18262022 (25 bp)
ATCCTTGTGCTCGAGCTGTCGAAAT
LOC_Os08g29940
OsAffx.5983.1.S1_at--100--4691Chr08:18261947..18261968 (22 bp)
GCTGTCGAAATTGTTCATTGACGGT
LOC_Os08g29940
OsAffx.5983.1.S1_at--682--8931Chr08:18261929..18261953 (25 bp)
TGACGGTAGTAGATGCGGTCAGCAT
LOC_Os08g29940
OsAffx.5983.1.S1_at--1080--5831Chr08:18261893..18261917 (25 bp)
GACCAACATGGAGACGTTATCGCCC
LOC_Os08g29940
OsAffx.5983.1.S1_at--229--6791Chr08:18261878..18261902 (25 bp)
GTTATCGCCCATCCGAGGTGACGAA
LOC_Os08g29940
OsAffx.5983.1.S1_at--959--7512Chr09:1203409..1203430 (22 bp)
GTGGAGACGAAGTTGCCCATCAGCA
LOC_Os09g02690
OsAffx.5983.1.S1_at--644--1631Chr08:18261819..18261843 (25 bp)
AGCGATGGCGAACTCCACCAACTAT
LOC_Os08g29940
OsAffx.5983.1.S1_at--511--5471Chr08:18261810..18261834 (25 bp)
GAACTCCACCAACTATGCAGAAGAA
LOC_Os08g29940
OsAffx.5983.1.S1_at--1029--7351Chr08:18261774..18261798 (25 bp)
GTGACGGTAGACGACCAATGATAAT
LOC_Os08g29940
OsAffx.5983.1.S1_at--605--711Chr08:18261757..18261781 (25 bp)
ATGATAATGACGACTGGCGGCAGCA
LOC_Os08g29940
Target Sequence 
AGGTATGATCCTTGTGCTCGAGCTGTCGAAATTGTTCATTGACGGTAGTAGATGCGGTCAGCATGGAGGCAAGATGACCA
ACATGGAGACGTTATCGCCCATCCGAGGTGACGAAGATGTCGGTTGTGGAGACGAAGTTGCCCATCAGCAGCGATGGCGA
ACTCCACCAACTATGCAGAAGAAGAAACCAATTGGTGACGGTAGACGACCAATGATAATGACGACTGGCGGCAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5983.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis