Browse Element(s) Details


OsAffx.25007.1.S1_at

Description gb:NM_196898.1
DB_XREF= gi:37535155
TID=OsAffx.25007.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative reverse transcriptase (OSJNBa0071K18.23), mRNA.
PROD=putative reverse transcriptase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3263011/11retrotransposon protein, putative, unclassified
LOC_Os05g404606/11retrotransposon protein, putative, unclassified
LOC_Os01g725006/11retrotransposon protein, putative, unclassified
LOC_Os03g074606/11hypothetical protein
LOC_Os01g419606/11retrotransposon protein, putative, unclassified
LOC_Os08g298805/11retrotransposon protein, putative, unclassified
LOC_Os04g292704/11retrotransposon protein, putative, unclassified
LOC_Os09g364104/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g32570OsAffx.30642.1.S1_at11/1110+16733823..16737210tRNA synthetase class I family protein, putative, expressed
LOC_Os10g32570Os.52782.1.S1_at1/1110+16733823..16737210tRNA synthetase class I family protein, putative, expressed
LOC_Os10g32580Os.5735.1.S1_at11/1110+16741534..16743085GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os10g32590Os.8163.1.S1_at11/1110+16744759..16745905universal stress protein family protein, expressed
LOC_Os10g32600OsAffx.30643.1.S1_at11/1110+16746707..16748588myb-like DNA-binding domain, SHAQKYF class family protein
LOC_Os10g32620NANA10+16758101..16758409hypothetical protein
LOC_Os10g32630OsAffx.25007.1.S1_at11/1110+16762174..16765071retrotransposon protein, putative, unclassified
LOC_Os10g32630OsAffx.25007.2.S1_s_at11/1110+16762174..16765071retrotransposon protein, putative, unclassified
LOC_Os10g32630OsAffx.25007.2.S1_at1/1110+16762174..16765071retrotransposon protein, putative, unclassified
LOC_Os10g32640NANA10+16765789..16769121retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g32649Os.27691.1.S1_x_at1/1110+16771508..16775994retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g32658Os.27691.2.S1_x_at2/1110+16776246..16777172retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g32670NANA10+16778619..16779059hypothetical protein
LOC_Os10g32680Os.17506.1.S1_at10/1110+16782614..16786056Uncharacterized conserved protein, putative, expressed
LOC_Os10g32690Os.7588.1.S1_at10/1110+16786925..16791317expressed protein
LOC_Os10g32700Os.32630.1.S1_at11/1110+16787898..16790429hypersensitive-induced response protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25007.1.S1_at--899--5138Chr09:21010394..21010418 (25 bp)
GCAAAATCGGCTTATTTAGCCCAAT
LOC_Os09g36410
OsAffx.25007.1.S1_at--288--4891Chr10:16762311..16762335 (25 bp)
GCTTATTTAGCCCAATTCGTCGGTA
LOC_Os10g32630
OsAffx.25007.1.S1_at--701--10171Chr10:16762308..16762332 (25 bp)
TATTTAGCCCAATTCGTCGGTAGAG
LOC_Os10g32630
OsAffx.25007.1.S1_at--545--9991Chr10:16762304..16762328 (25 bp)
TAGCCCAATTCGTCGGTAGAGAAGA
LOC_Os10g32630
OsAffx.25007.1.S1_at--570--6956Chr08:18236612..18236636 (25 bp)
GTAGAGAAGACTCAAGGGCCGCCAC
LOC_Os08g29880
OsAffx.25007.1.S1_at--257--2878Chr08:18236625..18236649 (25 bp)
AAGGGCCGCCACCTTGATTTGGAAG
LOC_Os08g29880
OsAffx.25007.1.S1_at--62--7578Chr08:18236627..18236650 (24 bp)
GGGCCGCCACCTTGATTTGGAAGAT
LOC_Os08g29880
OsAffx.25007.1.S1_at--773--8511Chr10:16762257..16762281 (25 bp)
TGGAAGATATGGGCGCCATCCAAAT
LOC_Os10g32630
OsAffx.25007.1.S1_at--549--8398Chr09:21010468..21010492 (25 bp)
GGCGCCATCCAAATGCAAAAACTTT
LOC_Os09g36410
OsAffx.25007.1.S1_at--886--2416Chr09:21010484..21010508 (25 bp)
AAAAACTTTGCATGGCTTGTCCTGC
LOC_Os09g36410
OsAffx.25007.1.S1_at--454--2537Chr09:21010487..21010511 (25 bp)
AACTTTGCATGGCTTGTCCTGCAAA
LOC_Os09g36410
Target Sequence 
GCAAAATCGGCTTATTTAGCCCAATTCGTCGGTAGAGAAGACTCAAGGGCCGCCACCTTGATTTGGAAGATATGGGCGCC
ATCCAAATGCAAAAACTTTGCATGGCTTGTCCTGCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25007.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis