Browse Element(s) Details


Os.8163.1.S1_at

Description gb:AK109194.1
DB_XREF= gi:32994403
TID=Os.8163.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8163 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0071K18.8), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-156-B07, full insert sequence.
FL= gb:AK109194.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3259011/11universal stress protein family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g32550Os.10551.1.S1_at11/1110+16718650..16724037Chaperonin CPN60-1, mitochondrial precursor, putative, expressed
LOC_Os10g32560Os.35344.3.S1_x_at8/1110+16726740..16732635transposon protein, putative, Mutator sub-class
LOC_Os10g32560Os.35344.18.S1_x_at8/1110+16726740..16732635transposon protein, putative, Mutator sub-class
LOC_Os10g32560OsAffx.22940.5.S1_x_at3/1110+16726740..16732635transposon protein, putative, Mutator sub-class
LOC_Os10g32570OsAffx.30642.1.S1_at11/1110+16733823..16737210tRNA synthetase class I family protein, putative, expressed
LOC_Os10g32570Os.52782.1.S1_at1/1110+16733823..16737210tRNA synthetase class I family protein, putative, expressed
LOC_Os10g32580Os.5735.1.S1_at11/1110+16741534..16743085GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os10g32590Os.8163.1.S1_at11/1110+16744759..16745905universal stress protein family protein, expressed
LOC_Os10g32600OsAffx.30643.1.S1_at11/1110+16746707..16748588myb-like DNA-binding domain, SHAQKYF class family protein
LOC_Os10g32620NANA10+16758101..16758409hypothetical protein
LOC_Os10g32630OsAffx.25007.1.S1_at11/1110+16762174..16765071retrotransposon protein, putative, unclassified
LOC_Os10g32630OsAffx.25007.2.S1_s_at11/1110+16762174..16765071retrotransposon protein, putative, unclassified
LOC_Os10g32630OsAffx.25007.2.S1_at1/1110+16762174..16765071retrotransposon protein, putative, unclassified
LOC_Os10g32640NANA10+16765789..16769121retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8163.1.S1_at--838--7631Chr10:16745136..16745160 (25 bp)
GGGACGCCGATTTCATGGAGACGAT
LOC_Os10g32590
Os.8163.1.S1_at--1008--8031Chr10:16745574..16745598 (25 bp)
GGAGTTCTTGATCGAACACAGCAAG
LOC_Os10g32590
Os.8163.1.S1_at--1124--3831Chr10:16745644..16745668 (25 bp)
CTGCTCAACACCAAGACGCACAAGA
LOC_Os10g32590
Os.8163.1.S1_at--758--5791Chr10:16745658..16745682 (25 bp)
GACGCACAAGAACTTTTGGCTCCTC
LOC_Os10g32590
Os.8163.1.S1_at--775--10851Chr10:16745673..16745697 (25 bp)
TTGGCTCCTCGCTTGATCATGATCA
LOC_Os10g32590
Os.8163.1.S1_at--305--411Chr10:16745688..16745712 (25 bp)
ATCATGATCATCACGGCCTAGATAG
LOC_Os10g32590
Os.8163.1.S1_at--42--6511Chr10:16745708..16745732 (25 bp)
GATAGTGATCCACACATCCATGCAG
LOC_Os10g32590
Os.8163.1.S1_at--827--3531Chr10:16745722..16745746 (25 bp)
CATCCATGCAGCTTCATATATGTTA
LOC_Os10g32590
Os.8163.1.S1_at--628--3651Chr10:16745787..16745811 (25 bp)
CTTCTCGCAGCAATGCTTGTGTCAG
LOC_Os10g32590
Os.8163.1.S1_at--502--10831Chr10:16745803..16745827 (25 bp)
TTGTGTCAGACACGATCGATCAATC
LOC_Os10g32590
Os.8163.1.S1_at--288--4051Chr10:16745819..16745843 (25 bp)
CGATCAATCGAGTTAATTCTTCATT
LOC_Os10g32590
Target Sequence 
GGGACGCCGATTTCATGGAGACGATGAGCGCCGCGTGCAAGGCGCGGCACCCGCGCGCCCGCGTCCGCGCCCTGCGCGTC
GAGCCCGCCACCGAGGGCCGCGAGGCCAAGGCCCAGACCATCCTCGCCGAGTCCCAGCGCCGCGGCGTCGAGCTCCTCGT
CATCGGCCACCGCCGCGTCTCCTCCTTCCTCGGGTTGAGGAGCCCGAGCGGGTCGAGCCGAGCGCACGACAGCACGGCGG
AGTTCTTGATCGAACACAGCAAGTGCGTGTGCGTGAGTGTGCAGAAGAAGGGGCAGAACGCCGGCTACCTGCTCAACACC
AAGACGCACAAGAACTTTTGGCTCCTCGCTTGATCATGATCATCACGGCCTAGATAGTGATCCACACATCCATGCAGCTT
CATATATGTTAATGGATCGAACAAAAGCTCCAAAAACTTTTTTTTTNGATTCTTCTCGCAGCAATGCTTGTGTCAGACAC
GATCGATCAATCGAGTTAATTCTTCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8163.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis