Browse Element(s) Details


Os.10551.1.S1_at

Description gb:AK069617.1
DB_XREF= gi:32979641
TID=Os.10551.1
CNT=34
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.10551 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) mitochondrial chaperonin-60 (OSJNBa0071K18.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023019K12, full insert sequence.
FL= gb:AK119623.1 gb:AK069617.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3255011/11Chaperonin CPN60-1, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g32509NANA10+16696487..16696798hypothetical protein
LOC_Os10g32520Os.8753.4.S1_x_at9/1110+16698772..16705749expressed protein
LOC_Os10g32520Os.8753.1.S1_at8/1110+16698772..16705749expressed protein
LOC_Os10g32520Os.8753.4.S1_at4/1110+16698772..16705749expressed protein
LOC_Os10g32520OsAffx.1293.1.S1_x_at1/1110+16698772..16705749expressed protein
LOC_Os10g32540Os.10154.1.S1_at9/1110+16710651..16718168SAP domain containing protein, expressed
LOC_Os10g32550Os.10551.1.S1_at11/1110+16718650..16724037Chaperonin CPN60-1, mitochondrial precursor, putative, expressed
LOC_Os10g32560Os.35344.3.S1_x_at8/1110+16726740..16732635transposon protein, putative, Mutator sub-class
LOC_Os10g32560Os.35344.18.S1_x_at8/1110+16726740..16732635transposon protein, putative, Mutator sub-class
LOC_Os10g32560OsAffx.22940.5.S1_x_at3/1110+16726740..16732635transposon protein, putative, Mutator sub-class
LOC_Os10g32570OsAffx.30642.1.S1_at11/1110+16733823..16737210tRNA synthetase class I family protein, putative, expressed
LOC_Os10g32570Os.52782.1.S1_at1/1110+16733823..16737210tRNA synthetase class I family protein, putative, expressed
LOC_Os10g32580Os.5735.1.S1_at11/1110+16741534..16743085GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os10g32590Os.8163.1.S1_at11/1110+16744759..16745905universal stress protein family protein, expressed
LOC_Os10g32600OsAffx.30643.1.S1_at11/1110+16746707..16748588myb-like DNA-binding domain, SHAQKYF class family protein

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Gene Ontology Classification
GO idTypeName
GO:0006954biological_processinflammatory response
GO:0007005biological_processmitochondrion organization and biogenesis
GO:0009408biological_processresponse to heat
GO:0051131biological_processchaperone-mediated protein complex assembly
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10551.1.S1_at--842--2751Chr10:16723169..16723192 (24 bp)
AAGACACCGGTGCACACTATTGCTT
LOC_Os10g32550
Os.10551.1.S1_at--381--10231Chr10:16723185..16723209 (25 bp)
TATTGCTTCCAACGCAGGTGTAGAA
LOC_Os10g32550
Os.10551.1.S1_at--844--7551Chr10:16723211..16723235 (25 bp)
GGGCTGTTGTTGTCGGTAAGCTTTT
LOC_Os10g32550
Os.10551.1.S1_at--603--1271Chr10:16723242..16723266 (25 bp)
AGATAACACCGACCTTGGCTATGAT
LOC_Os10g32550
Os.10551.1.S1_at--503--1431Chr10:16723423..16723447 (25 bp)
AGAACTGCCTTGGTGGATGCTGCAA
LOC_Os10g32550
Os.10551.1.S1_at--119--631Chr10:16723439..16723650 (25 bp)
ATGCTGCAAGCGTATCATCTCTGAT
LOC_Os10g32550
Os.10551.1.S1_at--949--5611Chr10:16723651..16723675 (25 bp)
GACAACCACGGAATCCATCATCGTA
LOC_Os10g32550
Os.10551.1.S1_at--1094--10351Chr10:16723789..16723813 (25 bp)
TTTTTGCGGTGCAAGTTCATCGTCG
LOC_Os10g32550
Os.10551.1.S1_at--295--5611Chr10:16723850..16723874 (25 bp)
GACAATTTTGATTCCACTGGCGGTA
LOC_Os10g32550
Os.10551.1.S1_at--365--6011Chr10:16723922..16723946 (25 bp)
GAGAGCTGAGGACTGCACTTCGATC
LOC_Os10g32550
Os.10551.1.S1_at--675--10731Chr10:16723951..16723975 (25 bp)
TTGAATCTGACACCTTGTGCCGGAA
LOC_Os10g32550
Target Sequence 
AAGACACCGGTGCACACTATTGCTTCCAACGCAGGTGTAGAAGGGGCTGTTGTTGTCGGTAAGCTTTTGGAACAAGATAA
CACCGACCTTGGCTATGATGCGGCTAAAGGTGAATATGTGGACATGGTGAAGGCTGGTATCATTGACCCACTAAAAGTGA
TCAGAACTGCCTTGGTGGATGCTGCAAGCGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAAG
GAAGAGAAGGAGGCGCCAGCGATGGGAGGCATGGGTGGAATGGATTACTAATCAACACCCATTAAAGTAAACTAAAAACA
TACTCCTGGGATTTAGGATTTTTTTTGCGGTGCAAGTTCATCGTCGATGTATTTTTTGTTCTTGTTGATGAGGTGGTTGT
CAGACAATTTTGATTCCACTGGCGGTAGGACNNNNNGGTTGGAACGAATAAAATTTTAGTTCAGAGCTAGGAGTTCTTGA
GAGCTGAGGACTGCACTTCGATCAAAATTGAATCTGACACCTTGTGCCGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10551.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis